Experiment summary for ENCSR975KIR

Supersedes ENCSR427DED

Summary

Status
released
Assay
eCLIP
Target
IGF2BP1
Biosample summary
Homo sapiens K562
Biosample Type
cell line
Replication type
isogenic
Description
eCLIP experiment on K562 against IGF2BP1
Nucleic acid type
RNA
Size range
175-300
Lysis method
see document
Extraction method
see document
Fragmentation methods
see document
Size selection method
agarose gel extraction
Strand specificity
Strand-specific
Controls

Attribution

ENCODE3 project
Lab
Gene Yeo, UCSD
Award
U54HG007005 (Brenton Graveley, UConn)
Project
ENCODE
External resources
Aliases
gene-yeo:220
Date submitted
March 21, 2016
Date released
July 15, 2015
Submitter comment
Fastq files ENCFF399XVR, ENCFF383VVS, ENCFF271KYF, and ENCFF088JXR contain reads of mixed lengths. Read length followed by number of reads: ENCFF399XVR (28, 191864), (29, 209427), (30, 220686), (31, 233776), (32, 244119), (33, 248030), (34, 245430), (35, 245229), (36, 244049), (37, 244179), (38, 238482), (39, 240382), (40, 242419), (41, 284914), (42, 453411), (43, 1033531), (44, 2842540); ENCFF383VVS (28, 196195), (29, 209667), (30, 216452), (31, 225322), (32, 228562), (33, 231319), (34, 227766), (35, 226415), (36, 218370), (37, 214648), (38, 207553), (39, 204781), (40, 203053), (41, 233840), (42, 339511), (43, 759648), (44, 1878539); ENCFF271KYF (30, 244304), (31, 213735), (32, 221497), (33, 230681), (34, 234327), (35, 237830), (36, 234620), (37, 232874), (38, 224563), (39, 220206), (40, 213348), (41, 209551), (42, 205905), (43, 226279), (44, 346256), (45, 832665), (46, 1693000); and ENCFF088JXR (30, 264809), (31, 217950), (32, 229026), (33, 242930), (34, 253881), (35, 258094), (36, 255500), (37, 255264), (38, 254267), (39, 253378), (40, 247685), (41, 249376), (42, 253161), (43, 283645), (44, 477255), (45, 1086818), (46, 2579429)
Tags
Search for all Experiment with internal tag ENCYCLOPEDIAv5Search for all Experiment with internal tag ENCORE

Isogenic replicates

Isogenic replicateTechnical replicateSummaryBiosampleAntibodyLibrary
11K562 cell lineENCBS476AUAENCAB108MXAENCLB089DKQ
21K562 cell lineENCBS301EZUENCAB108MXAENCLB795NJI