Experiment summary for ENCSR975KIR
doi:10.17989/ENCSR975KIR
Supersedes ENCSR427DED
Summary
- Status
- released
- Assay
- eCLIP
- Target
- IGF2BP1
- Biosample summary
- Homo sapiens K562
- Biosample Type
- cell line
- Replication type
- isogenic
- Description
- eCLIP experiment on K562 against IGF2BP1
- Nucleic acid type
- RNA
- Size range
- 175-300
- Fragmentation methods
- see document
- Size selection method
- agarose gel extraction
- Strand specificity
- Strand-specific
- Platform
- Illumina HiSeq 2000
- Controls
Attribution
ENCODE3 project
- Lab
- Gene Yeo, UCSD
- Award
- U54HG007005 (Brenton Graveley, UConn)
- Project
- ENCODE
- External resources
- References
- Aliases
- gene-yeo:220
- Date submitted
- March 21, 2016
- Date released
- July 15, 2015
- Submitter comment
- Fastq files ENCFF399XVR, ENCFF383VVS, ENCFF271KYF, and ENCFF088JXR contain reads of mixed lengths. Read length followed by number of reads: ENCFF399XVR (28, 191864), (29, 209427), (30, 220686), (31, 233776), (32, 244119), (33, 248030), (34, 245430), (35, 245229), (36, 244049), (37, 244179), (38, 238482), (39, 240382), (40, 242419), (41, 284914), (42, 453411), (43, 1033531), (44, 2842540); ENCFF383VVS (28, 196195), (29, 209667), (30, 216452), (31, 225322), (32, 228562), (33, 231319), (34, 227766), (35, 226415), (36, 218370), (37, 214648), (38, 207553), (39, 204781), (40, 203053), (41, 233840), (42, 339511), (43, 759648), (44, 1878539); ENCFF271KYF (30, 244304), (31, 213735), (32, 221497), (33, 230681), (34, 234327), (35, 237830), (36, 234620), (37, 232874), (38, 224563), (39, 220206), (40, 213348), (41, 209551), (42, 205905), (43, 226279), (44, 346256), (45, 832665), (46, 1693000); and ENCFF088JXR (30, 264809), (31, 217950), (32, 229026), (33, 242930), (34, 253881), (35, 258094), (36, 255500), (37, 255264), (38, 254267), (39, 253378), (40, 247685), (41, 249376), (42, 253161), (43, 283645), (44, 477255), (45, 1086818), (46, 2579429)
- Tags
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Antibody | Library |
|---|---|---|---|---|---|
| 1 | 1 | Homo sapiens K562 cell line | ENCBS476AUA | ENCAB108MXA | ENCLB089DKQ |
| 2 | 1 | Homo sapiens K562 cell line | ENCBS301EZU | ENCAB108MXA | ENCLB795NJI |