Experiment summary for ENCSR955ZJN
doi:10.17989/ENCSR955ZJN
Summary
- Status
- released
- Assay
- ChIP-seq (TF ChIP-seq)
- Target
- elt-2
- Biosample summary
- Caenorhabditis elegans strain OP56 (unc-119(ed3) III; wgIs56) whole organism hermaphrodite L3 larva 40 hours post synchronization at L1 larva starved after bleaching stage genetically modified (insertion) using bombardment targeting C. elegans elt-2
- Biosample Type
- whole organisms
- Replication type
- isogenic
- Description
- ChIP-seq of transgenic worms expressing ELT-2-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
- Nucleic acid type
- DNA
- Fragmentation methods
- sonication (generic microtip)
- Size selection method
- SPRI beads
- Platform
- Illumina HiSeq 2500
- Controls
Attribution
modERN project
- Lab
- Valerie Reinke, Yale
- Award
- U41HG007355 (Robert Waterston, UW)
- Project
- modERN
- External resources
- Aliases
- kevin-white:ELT-2-OP56-L3
- Date submitted
- May 9, 2016
- Date released
- September 29, 2016
- Submitter comment
- ENCFF406ZPQ, ENCFF388IMN, ENCFF820TLT, ENCFF655CLT were revoked because a software bug accidentally truncated the file content. The submitters will provide replacement files.
- Factorbook
Encyclopedia Integration
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Modifications | Antibody | Library |
---|---|---|---|---|---|---|
2 | 1 | Caenorhabditis elegans strain OP56 (unc-119(ed3) III; wgIs56) hermaphrodite L3 larva 40 hours post synchronization at L1 larva starved after bleaching stage whole organism genetically modified (insertion) using bombardment targeting C. elegans elt-2 | ENCBS524FHL | ENCGM676QSB | ENCAB728YTO | ENCLB797OAA |
1 | 1 | Caenorhabditis elegans strain OP56 (unc-119(ed3) III; wgIs56) hermaphrodite L3 larva 40 hours post synchronization at L1 larva starved after bleaching stage whole organism genetically modified (insertion) using bombardment targeting C. elegans elt-2 | ENCBS103AML | ENCGM676QSB | ENCAB728YTO | ENCLB722PGJ |