Experiment summary for ENCSR955ZJN

doi:10.17989/ENCSR955ZJN

Summary

Status
released
Assay
ChIP-seq (TF ChIP-seq)
Target
elt-2
Biosample summary
Caenorhabditis elegans strain OP56 (unc-119(ed3) III; wgIs56) whole organism hermaphrodite L3 larva 40 hours post synchronization at L1 larva starved after bleaching stage genetically modified (insertion) using bombardment targeting C. elegans elt-2
Biosample Type
whole organisms
Replication type
isogenic
Description
ChIP-seq of transgenic worms expressing ELT-2-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
Nucleic acid type
DNA
Fragmentation methods
sonication (generic microtip)
Size selection method
SPRI beads
Controls

Attribution

modERN project
Lab
Valerie Reinke, Yale
Award
U41HG007355 (Robert Waterston, UW)
Project
modERN
External resources
Aliases
kevin-white:ELT-2-OP56-L3
Date submitted
May 9, 2016
Date released
September 29, 2016
Submitter comment
ENCFF406ZPQ, ENCFF388IMN, ENCFF820TLT, ENCFF655CLT were revoked because a software bug accidentally truncated the file content. The submitters will provide replacement files.

Encyclopedia Integration

Isogenic replicates

Isogenic replicate
Technical replicate
Summary
Biosample
Modifications
Antibody
Library
21Caenorhabditis elegans strain OP56 (unc-119(ed3) III; wgIs56) hermaphrodite L3 larva 40 hours post synchronization at L1 larva starved after bleaching stage whole organism genetically modified (insertion) using bombardment targeting C. elegans elt-2ENCBS524FHLENCGM676QSBENCAB728YTOENCLB797OAA
11Caenorhabditis elegans strain OP56 (unc-119(ed3) III; wgIs56) hermaphrodite L3 larva 40 hours post synchronization at L1 larva starved after bleaching stage whole organism genetically modified (insertion) using bombardment targeting C. elegans elt-2ENCBS103AMLENCGM676QSBENCAB728YTOENCLB722PGJ