Experiment summary for ENCSR944DTY
Summary
- Status
- released
- Assay
- PRO-cap
- Biosample summary
- Homo sapiens SEM
- Biosample Type
- cell line
- Replication type
- isogenic
- Description
- A run-on assay that precisely maps the transcription start sites genome-wide with high sensitivity and specificity in SEM.
- Nucleic acid type
- RNA
- Average fragment size
- 73 [1-1]74 [2-1]
- Size selection method
- Streptavidin magnetic beads
- Library construction method
- capped RNA enrichment
- Strand specificity
- Strand-specific (reverse)
- Platform
- Illumina NovaSeq 6000
Attribution
ENCODE4 project
- Lab
- Haiyuan Yu, Cornell
- Award
- UM1HG009393 (John Lis, Cornell)
- Project
- ENCODE
- Aliases
- haiyuan-yu:procap-experiment-SEM
- Date released
- December 11, 2025
- Submitter comment
- Experiment performed by Sagar R. Shah and preprocessed by Alden Leung
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Library |
|---|---|---|---|---|
| 1 | 1 | Homo sapiens SEM cell line | ENCBS645MJS | ENCLB252HEL |
| 2 | 1 | Homo sapiens SEM cell line | ENCBS198VEB | ENCLB641JTM |