Experiment summary for ENCSR939XWM
doi:10.17989/ENCSR939XWM
Summary
- Status
- released
- Assay
- ATAC-seq
- Biosample summary
- Mus musculus strain C57BL/6J dendritic cell originated from whole organism treated with 100 ng/mL lipopolysaccharide for 1 hour
- Biosample Type
- in vitro differentiated cells
- Replication type
- isogenic
- Description
- ATAC-seq
- Treatments
- 100 ng/mL lipopolysaccharide (CHEBI:16412) for 1 hour
- Nucleic acid type
- DNA
- Size range
- 175-500
- Extraction method
- ATAC-seq (Greenleaf & Chang Lab protocol)
- Platform
- Illumina NextSeq 500
Attribution
Genomics of Gene Regulation Project
- Lab
- Manuel Garber, UMass
- Award
- U01HG007910 (Jeremy Luban, UMass)
- Project
- GGR
- External resources
- Aliases
- manuel-garber:M02_BMDC_ATAC_Lps_1h_ATAC-seq
- Date submitted
- January 18, 2017
- Date released
- January 19, 2017
- Annotation (gkmsvm-model)
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Library |
---|---|---|---|---|
2 | 1 | Mus musculus strain C57BL/6J dendritic in vitro differentiated cells originated from whole organism treated with 100 ng/mL lipopolysaccharide for 1 hour | ENCBS155QBX | ENCLB607DLY |
1 | 1 | Mus musculus strain C57BL/6J dendritic in vitro differentiated cells originated from whole organism treated with 100 ng/mL lipopolysaccharide for 1 hour | ENCBS795OWW | ENCLB297GDC |