Experiment summary for ENCSR939WVU

doi:10.17989/ENCSR939WVU

Summary

Status
released
Assay
ATAC-seq
Biosample summary
Homo sapiens foreskin keratinocyte male newborn (2-4 days) treated with 1.2 mM calcium for 4.5 days
Biosample Type
primary cell
Replication type
anisogenic
Description
ATAC-seq on primary keratinocytes in day 5.0 of differentiation
Treatments
1.2 mM calcium (CHEBI:86158) for 4.5 days
Nucleic acid type
DNA
RNA integrity number
8.9 [1-4]8 [2-2]8 [2-3]8.9 [1-3]8 [2-1]8 [2-4]8 [2-6]8.9 [1-1]8.9 [1-2]8 [2-5]

Attribution

Genomics of Gene Regulation Project
Lab
Will Greenleaf, Stanford
Award
U01HG007919 (Michael Snyder, Stanford)
Project
GGR
External resources
Aliases
michael-snyder:ggr-skin-atacseq-day50
Date submitted
January 27, 2017
Date released
October 10, 2017
Treatment Time Series
ENCSR968JDE 
Annotation (gkmsvm-model)

Anisogenic replicates

Anisogenic replicate
Technical replicate
Summary
Biosample
Library
14Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 4.5 daysENCBS616IKMENCLB771QQE
22Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 4.5 daysENCBS379WNCENCLB252RPL
23Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 4.5 daysENCBS379WNCENCLB939WGI
13Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 4.5 daysENCBS616IKMENCLB236UMT
21Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 4.5 daysENCBS379WNCENCLB458BOO
24Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 4.5 daysENCBS379WNCENCLB996QFW
26Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 4.5 daysENCBS379WNCENCLB920SPF
11Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 4.5 daysENCBS616IKMENCLB431NYD
12Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 4.5 daysENCBS616IKMENCLB554GEK
25Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 4.5 daysENCBS379WNCENCLB436WON