Experiment summary for ENCSR937PSF

doi:10.17989/ENCSR937PSF

Summary

Status
released
Assay
single-nucleus ATAC-seq (snATAC-seq)
Biosample summary
Mus musculus strain B6NCrl forebrain tissue embryo (11.5 days)
Biosample Type
tissue
Replication type
isogenic
Description
snATAC-seq of mouse forebrain
Nucleic acid type
DNA
Size range
200-750
Lysis method
[NPB (5% BSA (Sigma), 0.2% IGEPAL-CA630 (Sigma), cOmplete (Roche), 1mM DTT in PBS)]
Fragmentation methods
chemical (Nextera tagmentation)
Size selection method
AMPure XP bead purification

Attribution

ENCODE3 project
Lab
Bing Ren, UCSD
Award
U54HG006997 (Bing Ren, UCSD)
Project
ENCODE
Aliases
bing-ren:e11.5_forebrain_snATAC
Date submitted
December 3, 2018
Date released
April 19, 2019
Organism Development Series
ENCSR872HWD 

Isogenic replicates

Isogenic replicate
Technical replicate
Summary
Biosample
Library
21Mus musculus strain B6NCrl mixed sex embryo (11.5 days) forebrain tissueENCBS720JOHENCLB811TNC
11Mus musculus strain B6NCrl mixed sex embryo (11.5 days) forebrain tissueENCBS745VOMENCLB675KOC