Experiment summary for ENCSR923VWW
doi:10.17989/ENCSR923VWW
Summary
- Status
- released
- Assay
- ChIP-seq (TF ChIP-seq)
- Target
- sqz
- Biosample summary
- Drosophila melanogaster strain sqz-GFP whole organism embryo (0-16 hours) genetically modified (insertion) using site-specific recombination targeting D. melanogaster sqz
- Biosample Type
- whole organisms
- Replication type
- isogenic
- Description
- Input control for ChIP-seq on transgenic flies expressing sqz-eGFP fusion proteins.
- Nucleic acid type
- DNA
- Size range
- 200-800
- Fragmentation methods
- sonication (Bioruptor generic)
- Size selection method
- SPRI beads
- Platform
- Illumina HiSeq 4000
- Controls
Attribution
modERN project
- Lab
- Kevin White, UChicago
- Award
- U41HG007355 (Robert Waterston, UW)
- Project
- modERN
- External resources
- Aliases
- kevin-white:sqz-GFP
- Date submitted
- February 1, 2018
- Date released
- February 6, 2018
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Modifications | Antibody | Library |
|---|---|---|---|---|---|---|
| 3 | 1 | Drosophila melanogaster strain sqz-GFP mixed sex embryo (0-16 hours) whole organism genetically modified (insertion) using site-specific recombination targeting D. melanogaster sqz | ENCBS213VDW | ENCGM457HVY | ENCAB728YTO | ENCLB687UHE |
| 1 | 1 | Drosophila melanogaster strain sqz-GFP mixed sex embryo (0-16 hours) whole organism genetically modified (insertion) using site-specific recombination targeting D. melanogaster sqz | ENCBS403RQG | ENCGM457HVY | ENCAB728YTO | ENCLB859RGV |
| 2 | 1 | Drosophila melanogaster strain sqz-GFP mixed sex embryo (0-16 hours) whole organism genetically modified (insertion) using site-specific recombination targeting D. melanogaster sqz | ENCBS884XSR | ENCGM457HVY | ENCAB728YTO | ENCLB480LRW |