Experiment summary for ENCSR913DBS
doi:10.17989/ENCSR913DBS
Summary
- Status
- released
- Assay
- siRNA knockdown followed by RNA-seq (siRNA RNA-seq)
- Control type
- control
- Biosample summary
- Drosophila melanogaster strain Oregon-R S2
- Biosample Type
- cell line
- Replication type
- unreplicated
- Description
- Total RNA-seq in S2-DRSC cell line (Oligo-dT selected, double stranded cDNA).
- Nucleic acid type
- RNA
- Size range
- >200
- Extraction method
- Trizol
- Strand specificity
- unstranded
- Spike-ins datasets
- ENCSR358OMW
- Platform
- Illumina Genome Analyzer IIx
Attribution
modENCODE Project
- Lab
- Brenton Graveley, UConn
- Award
- U01HG004271 (Susan Celniker, LBNL)
- Project
- modENCODE
- External resources
- References
- Aliases
- brenton-graveley:S2-DRSC-Untreated-RNAi-6-7
- Date submitted
- March 31, 2014
- Date released
- March 31, 2014
- Gene Silencing Series
- ENCSR384DPN , ENCSR574EEN , ENCSR575USX , ENCSR737ESP , ENCSR037JNK , ENCSR626HVN , ENCSR636ZNG , ENCSR997WJQ , ENCSR926RMV , ENCSR407ZVJ , ENCSR592YJM , ENCSR976WIB , ENCSR094YVX , ENCSR952BYE , ENCSR061YJO , ENCSR485EOD , ENCSR131QQB , ENCSR326MPJ , ENCSR867LSP , ENCSR218LBJ , ENCSR815MXU , ENCSR832FQJ , ENCSR082OKM , ENCSR004DEZ , ENCSR174WGG , ENCSR651PFY , ENCSR251DIK , ENCSR418XBQ , ENCSR744EEZ , ENCSR409JFF , ENCSR058VZQ , ENCSR942LIN , ENCSR891DMJ , ENCSR808WNU , ENCSR932IQC , ENCSR047VHK , ENCSR870VDK , ENCSR339ZLI , ENCSR822HFW , ENCSR695TKX , ENCSR604VWV , ENCSR089ILO , ENCSR936RZO , ENCSR087TUT , ENCSR966EAQ , ENCSR296FNW , ENCSR207HIK , ENCSR113UAK , ENCSR604HPX , ENCSR799IUJ , ENCSR720CPC , ENCSR970MHD , ENCSR781NAP , ENCSR107TJS , ENCSR124EPI , ENCSR414YVD , ENCSR550PAM
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Library |
|---|---|---|---|---|
| 1 | 1 | Drosophila melanogaster strain Oregon-R S2 cell line | ENCBS855QAW | ENCLB501OIZ |