Experiment summary for ENCSR898ATP
doi:10.17989/ENCSR898ATP
Summary
- Status
- released
- Assay
- ChIP-seq (TF ChIP-seq)
- Target
- K09A11.1
- Biosample summary
- Caenorhabditis elegans strain OP372 (unc-119(tm4063) III; wgIs372) whole organism hermaphrodite late embryo genetically modified (insertion) using bombardment targeting C. elegans K09A11.1
- Biosample Type
- whole organisms
- Replication type
- isogenic
- Description
- ChIP-seq of transgenic worms expressing K09A11.1-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
- Nucleic acid type
- DNA
- Fragmentation methods
- sonication (generic microtip)
- Size selection method
- E-Gel
- Platform
- Illumina Genome Analyzer IIx
- Controls
Attribution
modERN project
- Lab
- Valerie Reinke, Yale
- Award
- U41HG007355 (Robert Waterston, UW)
- Project
- modERN
- External resources
- Aliases
- kevin-white:K09A11.1-OP372-LE
- Date submitted
- July 30, 2015
- Date released
- November 22, 2017
- Submitter comment
- This experiment was completed during modENCODE and has lower read depth than the current modERN standard.
- Factorbook
Encyclopedia Integration
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Modifications | Antibody | Library |
|---|---|---|---|---|---|---|
| 2 | 1 | Caenorhabditis elegans strain OP372 (unc-119(tm4063) III; wgIs372) hermaphrodite late embryo whole organism genetically modified (insertion) using bombardment targeting C. elegans K09A11.1 | ENCBS337KTQ | ENCGM057RFE | ENCAB435FBQ | ENCLB766FYH |
| 1 | 2 | Caenorhabditis elegans strain OP372 (unc-119(tm4063) III; wgIs372) hermaphrodite late embryo whole organism genetically modified (insertion) using bombardment targeting C. elegans K09A11.1 | ENCBS874KTH | ENCGM057RFE | ENCAB435FBQ | ENCLB612OPP |
| 1 | 1 | Caenorhabditis elegans strain OP372 (unc-119(tm4063) III; wgIs372) hermaphrodite late embryo whole organism genetically modified (insertion) using bombardment targeting C. elegans K09A11.1 | ENCBS874KTH | ENCGM057RFE | ENCAB435FBQ | ENCLB910PXC |
| 2 | 2 | Caenorhabditis elegans strain OP372 (unc-119(tm4063) III; wgIs372) hermaphrodite late embryo whole organism genetically modified (insertion) using bombardment targeting C. elegans K09A11.1 | ENCBS337KTQ | ENCGM057RFE | ENCAB435FBQ | ENCLB522KIW |