1. Experiments
  2. polyA plus RNA-seq
  3. Homo sapiens
  4. GM12878

Experiment summary for ENCSR889TRN

doi:10.17989/ENCSR889TRN

Supersedes ENCSR000AJD

Summary

Status
released
Assay
polyA plus RNA-seq
Biosample summary
Homo sapiens GM12878
Biosample Type
cell line
Replication type
isogenic
Description
PolyA RNA-Seq from oligo-dT primed Total RNA on bulk prep (10 pg) from the GM12878 cell line
Nucleic acid type
polyadenylated mRNA
Library starting quantity
10ng
Size range
>200
Extraction method
Ambion mirVana
Fragmentation methods
chemical (Nextera tagmentation)
Size selection method
SPRI beads
Strand specificity
unstranded
Spike-ins datasets
ENCSR884LPM

Attribution

ENCODE3 project
Lab
Barbara Wold, Caltech
Award
U54HG006998 (Richard Myers, HAIB)
Project
ENCODE
External resources
Aliases
barbara-wold:single-cell-13274-exp
Date submitted
July 28, 2016
Date released
June 13, 2016
Tags
Search for all Experiment with internal tag ENCYCLOPEDIAv1Search for all Experiment with internal tag ENCYCLOPEDIAv2

Isogenic replicates

Isogenic replicate
Technical replicate
Summary
Biosample
Library
11Homo sapiens GM12878 cell lineENCBS195IGIENCLB360EJW
21Homo sapiens GM12878 cell lineENCBS195IGIENCLB855HEY

Files

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Output type
Replicates

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