Experiment summary for ENCSR888DFI

doi:10.17989/ENCSR888DFI

Summary

Status
archived
Assay
ChIP-seq (TF ChIP-seq)
Target
pqm-1
Biosample summary
Caenorhabditis elegans strain OP201 (unc-119(tm4063) III; wgIs201) whole organism L3 larva genetically modified (insertion) using bombardment targeting C. elegans pqm-1
Biosample Type
whole organisms
Replication type
isogenic
Description
ChIP-seq against PQM-1 in L3 larva worms.
Nucleic acid type
DNA
Fragmentation methods
sonication (generic microtip)
Controls

Attribution

modENCODE Project
Lab
Michael Snyder, Stanford
Award
U01HG004267 (Michael Snyder, Stanford)
Project
modENCODE
Aliases
modencode:4
Date released
March 9, 2018
Submitter comment
Reanalysis by modERN project showed that only replicate 1 was of quality.

Isogenic replicates

Isogenic replicate
Technical replicate
Summary
Biosample
Modifications
Antibody
Library
31Caenorhabditis elegans strain OP201 (unc-119(tm4063) III; wgIs201) mixed sex L3 larva whole organism genetically modified (insertion) using bombardment targeting C. elegans pqm-1ENCBS462KWCENCGM456SDHENCAB435FBQENCLB501MIG
11Caenorhabditis elegans strain OP201 (unc-119(tm4063) III; wgIs201) mixed sex L3 larva whole organism genetically modified (insertion) using bombardment targeting C. elegans pqm-1ENCBS881MLCENCGM456SDHENCAB435FBQENCLB123GRO
21Caenorhabditis elegans strain OP201 (unc-119(tm4063) III; wgIs201) mixed sex L3 larva whole organism genetically modified (insertion) using bombardment targeting C. elegans pqm-1ENCBS448WGRENCGM456SDHENCAB435FBQENCLB750ATA