Experiment summary for ENCSR888DFI
doi:10.17989/ENCSR888DFI
Summary
- Status
- archived
- Assay
- ChIP-seq (TF ChIP-seq)
- Target
- pqm-1
- Biosample summary
- Caenorhabditis elegans strain OP201 (unc-119(tm4063) III; wgIs201) whole organism L3 larva genetically modified (insertion) using bombardment targeting C. elegans pqm-1
- Biosample Type
- whole organisms
- Replication type
- isogenic
- Description
- ChIP-seq against PQM-1 in L3 larva worms.
- Nucleic acid type
- DNA
- Fragmentation methods
- sonication (generic microtip)
- Platform
- Illumina Genome Analyzer IIx
- Controls
Attribution
modENCODE Project
- Lab
- Michael Snyder, Stanford
- Award
- U01HG004267 (Michael Snyder, Stanford)
- Project
- modENCODE
- Aliases
- modencode:4
- Date released
- March 9, 2018
- Submitter comment
- Reanalysis by modERN project showed that only replicate 1 was of quality.
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Modifications | Antibody | Library |
---|---|---|---|---|---|---|
3 | 1 | Caenorhabditis elegans strain OP201 (unc-119(tm4063) III; wgIs201) mixed sex L3 larva whole organism genetically modified (insertion) using bombardment targeting C. elegans pqm-1 | ENCBS462KWC | ENCGM456SDH | ENCAB435FBQ | ENCLB501MIG |
1 | 1 | Caenorhabditis elegans strain OP201 (unc-119(tm4063) III; wgIs201) mixed sex L3 larva whole organism genetically modified (insertion) using bombardment targeting C. elegans pqm-1 | ENCBS881MLC | ENCGM456SDH | ENCAB435FBQ | ENCLB123GRO |
2 | 1 | Caenorhabditis elegans strain OP201 (unc-119(tm4063) III; wgIs201) mixed sex L3 larva whole organism genetically modified (insertion) using bombardment targeting C. elegans pqm-1 | ENCBS448WGR | ENCGM456SDH | ENCAB435FBQ | ENCLB750ATA |