1. Experiments
  2. RNA-seq
  3. Homo sapiens
  4. K562

Experiment summary for ENCSR885DVH

doi:10.17989/ENCSR885DVH

Summary

Status
released
Assay
RNA-seq (total RNA-seq)
Biosample summary
Homo sapiens K562
Biosample Type
cell line
Replication type
isogenic
Description
Initial total fractions on K562 Long Total from Lecuyer
Nucleic acid type
RNA
Depleted in
rRNA
Size range
>200
Extraction method
Trizol
Fragmentation methods
chemical (Illumina TruSeq)
Size selection method
SPRI beads
Strand specificity
Strand-specific (reverse)

Attribution

ENCODE3 project
Lab
Eric Lécuyer, IRCM
Award
U54HG007005 (Brenton Graveley, UConn)
Project
ENCODE
External resources
Aliases
eric-lecuyer:K562-init-Total
Date submitted
February 21, 2015
Date released
April 21, 2016
Annotation (physical modeling)
Tags
Visit collection page for ENCORESearch for all Experiment with internal tag ENCYCLOPEDIAv1Search for all Experiment with internal tag ENCYCLOPEDIAv2

Isogenic replicates

Isogenic replicate
Technical replicate
Summary
Biosample
Library
11Homo sapiens K562 cell lineENCBS036OIXENCLB728XIS
21Homo sapiens K562 cell lineENCBS403VZZENCLB381UET

Files

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File format
Output type
Replicates

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