Experiment summary for ENCSR862DMN
doi:10.17989/ENCSR862DMN
Summary
- Status
- released
- Assay
- ChIP-seq (TF ChIP-seq)
- Target
- hlh-11
- Biosample summary
- Caenorhabditis elegans strain OP396 (unc-119(tm4063) III; wgIs396) whole organism L4 larva (53 hours) at L1 larva starved after bleaching stage genetically modified (insertion) using bombardment targeting C. elegans hlh-11
- Biosample Type
- whole organisms
- Replication type
- isogenic
- Description
- ChIP-seq on transgenic worms expressing hlh-11-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
- Nucleic acid type
- DNA
- Size range
- 200-800
- Fragmentation methods
- sonication (Bioruptor generic)
- Size selection method
- SPRI beads
- Platform
- Illumina HiSeq 4000
- Controls
Attribution
modERN project
- Lab
- Kevin White, UChicago
- Award
- U41HG007355 (Robert Waterston, UW)
- Project
- modERN
- External resources
- Aliases
- kevin-white:HLH-11_OP396_L4
- Date submitted
- May 31, 2018
- Date released
- June 12, 2018
- Factorbook
Encyclopedia Integration
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Modifications | Antibody | Library |
---|---|---|---|---|---|---|
1 | 1 | Caenorhabditis elegans strain OP396 (unc-119(tm4063) III; wgIs396) mixed sex L4 larva (53 hours) at L1 larva starved after bleaching stage whole organism genetically modified (insertion) using bombardment targeting C. elegans hlh-11 | ENCBS166EMA | ENCGM239EYE | ENCAB728YTO | ENCLB403ZAO |
2 | 1 | Caenorhabditis elegans strain OP396 (unc-119(tm4063) III; wgIs396) mixed sex L4 larva (53 hours) at L1 larva starved after bleaching stage whole organism genetically modified (insertion) using bombardment targeting C. elegans hlh-11 | ENCBS986WRP | ENCGM239EYE | ENCAB728YTO | ENCLB830SJO |