Experiment summary for ENCSR850KFE

doi:10.17989/ENCSR850KFE

Summary

Status
released
Assay
ChIP-seq (Control ChIP-seq)
Control type
input library
Biosample summary
Homo sapiens SK-N-SH genetically modified (insertion) using CRISPR targeting H. sapiens CSDC2 treated with 6 μM all-trans-retinoic acid for 48 hours
Biosample Type
cell line
Replication type
unreplicated
Description
ChIP-seq on human SK-N-SH
Treatments
6 μM all-trans-retinoic acid (CHEBI:15367) for 48 hours
Nucleic acid type
DNA
Size range
250-450
Fragmentation methods
sonication (Bioruptor Pico)

Attribution

ENCODE4 project
Lab
Michael Snyder, Stanford
Award
UM1HG009442 (Michael Snyder, Stanford)
Project
ENCODE
External resources
Aliases
michael-snyder:pPI-CTL_pB-2608
Date submitted
December 21, 2018
Date released
January 25, 2022

Isogenic replicates

Isogenic replicate
Technical replicate
Summary
Biosample
Modifications
Library
11Homo sapiens SK-N-SH cell line genetically modified (insertion) using CRISPR targeting H. sapiens CSDC2 treated with 6 μM all-trans-retinoic acid for 48 hoursENCBS769VOWENCGM678TAKENCLB579GKV