1. Experiments
  2. ChIP-seq
  3. Drosophila melanogaster
  4. whole organism

Experiment summary for ENCSR846PTH

doi:10.17989/ENCSR846PTH

Summary

Status
released
Assay
ChIP-seq (TF ChIP-seq)
Target
CG16779
Biosample summary
Drosophila melanogaster strain CG16779-MiMIC whole organism prepupa genetically modified (insertion) using site-specific recombination targeting D. melanogaster CG16779
Biosample Type
whole organisms
Replication type
isogenic
Description
ChIP-seq on transgenic flies expressing CG16779-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
Nucleic acid type
DNA
Size range
200-800
Fragmentation methods
sonication (Bioruptor generic)
Size selection method
SPRI beads
Controls

Attribution

modERN project
Lab
Kevin White, UChicago
Award
U41HG007355 (Robert Waterston, UW)
Project
modERN
External resources
Aliases
kevin-white:CG16779-MiMIC-GFP
Date submitted
December 21, 2016
Date released
January 11, 2017
Submitter comment
ENCFF611XKR and ENCFF031NBE were revoked because a software bug accidentally truncated the file content. The submitters have provided replacement files.

Encyclopedia Integration

Isogenic replicates

Isogenic replicate
Technical replicate
Summary
Biosample
Modifications
Antibody
Library
11Drosophila melanogaster strain CG16779-MiMIC mixed sex prepupa whole organism genetically modified (insertion) using site-specific recombination targeting D. melanogaster CG16779ENCBS827ZIPENCGM041MGWENCAB728YTOENCLB647EYD
21Drosophila melanogaster strain CG16779-MiMIC mixed sex prepupa whole organism genetically modified (insertion) using site-specific recombination targeting D. melanogaster CG16779ENCBS486IKGENCGM041MGWENCAB728YTOENCLB118DQR
31Drosophila melanogaster strain CG16779-MiMIC mixed sex prepupa whole organism genetically modified (insertion) using site-specific recombination targeting D. melanogaster CG16779ENCBS555HGGENCGM041MGWENCAB728YTOENCLB615ICC

Files

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Output type
Replicates

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