Experiment summary for ENCSR836LVI

doi:10.17989/ENCSR836LVI

Summary

Status
released
Assay
ChIP-seq (TF ChIP-seq)
Target
aly-1
Biosample summary
Caenorhabditis elegans strain OP502 (unc-119(tm4063) III; wgIs502) whole organism hermaphrodite early embryo 0 hours post synchronization using egg bleaching genetically modified (insertion) using bombardment targeting C. elegans aly-1
Biosample Type
whole organisms
Replication type
isogenic
Description
ChIP-seq of transgenic worms expressing ALY-1-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
Nucleic acid type
DNA
Fragmentation methods
sonication (generic microtip)
Size selection method
SPRI beads
Controls

Attribution

modERN project
Lab
Valerie Reinke, Yale
Award
U41HG007355 (Robert Waterston, UW)
Project
modERN
External resources
Aliases
kevin-white:ALY-1-OP502-EE
Date submitted
July 29, 2015
Date released
May 24, 2016
Submitter comment
ENCFF613TSV, ENCFF045LPU were revoked because a software bug accidentally truncated the file content. The submitters have provided replacement files.

Isogenic replicates

Isogenic replicate
Technical replicate
Summary
Biosample
Modifications
Antibody
Library
21Caenorhabditis elegans strain OP502 (unc-119(tm4063) III; wgIs502) hermaphrodite early embryo 0 hours post synchronization using egg bleaching whole organism genetically modified (insertion) using bombardment targeting C. elegans aly-1ENCBS438OXEENCGM534IJWENCAB728YTOENCLB822KDY
11Caenorhabditis elegans strain OP502 (unc-119(tm4063) III; wgIs502) hermaphrodite early embryo 0 hours post synchronization using egg bleaching whole organism genetically modified (insertion) using bombardment targeting C. elegans aly-1ENCBS647BZCENCGM534IJWENCAB728YTOENCLB856KYV