Experiment summary for ENCSR834DXR
doi:10.17989/ENCSR834DXR
Summary
- Status
- released
- Assay
- HiC (in situ Hi-C)
- Biosample summary
- Homo sapiens SK-N-MC
- Biosample Type
- cell line
- Replication type
- isogenic
- Description
- HiC experiment done on SK-N-MC
- Nucleic acid type
- DNA
- Fragmentation methods
- chemical (HindIII restriction)
- Platform
- Illumina HiSeq 2000, Illumina HiSeq 2500
Attribution
ENCODE3 project
- Lab
- Job Dekker, UMass
- Award
- U54HG007010 (John Stamatoyannopoulos, UW)
- Project
- ENCODE
- External resources
- References
- Date submitted
- April 18, 2016
- Date released
- May 13, 2016
- Submitter comment
- Due to the sequencing depth of the dataset the following steps of the pipeline were excluded: arrowhead, hiccups, and delta. This dataset therefore does not have long range chromatin interactions, chromatin stripes, and topologically associated domains outputs.
- Tags
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Library |
|---|---|---|---|---|
| 1 | 1 | Homo sapiens SK-N-MC cell line | ENCBS366AET | ENCLB215KZO |
| 2 | 1 | Homo sapiens SK-N-MC cell line | ENCBS400ENC | ENCLB914GYK |