Experiment summary for ENCSR828LSC
doi:10.17989/ENCSR828LSC
Summary
- Status
- released
- Assay
- small RNA-seq
- Biosample summary
- Homo sapiens neural progenitor cell originated from H9
- Biosample Type
- in vitro differentiated cells
- Replication type
- isogenic
- Description
- The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a neuronal pathway. They are stranded SE101 length reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
- Treatments
- Tobacco Acid Pyrophosphatase for 1 hour
- Nucleic acid type
- RNA
- Depleted in
- rRNA
- Size range
- <200
- Fragmentation methods
- see document
- Strand specificity
- Strand-specific (forward)
- Platform
- Illumina HiSeq 2000
Attribution
ENCODE3 project
- Lab
- Thomas Gingeras, CSHL
- Award
- U54HG007004 (Thomas Gingeras, CSHL)
- Project
- ENCODE
- External resources
- References
- Date submitted
- April 2, 2015
- Date released
- January 8, 2015
- Reference Epigenome
- ENCSR372BDU
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Library |
---|---|---|---|---|
1 | 1 | Homo sapiens female embryo (5 days) neural progenitor in vitro differentiated cells originated from H9 | ENCBS018TPT | ENCLB090HYB |
2 | 1 | Homo sapiens female embryo (5 days) neural progenitor in vitro differentiated cells originated from H9 | ENCBS044KWE | ENCLB688VFK |