Experiment summary for ENCSR828LSC

doi:10.17989/ENCSR828LSC

Summary

Status
released
Assay
small RNA-seq
Biosample summary
Homo sapiens neural progenitor cell originated from H9
Biosample Type
in vitro differentiated cells
Replication type
isogenic
Description
The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a neuronal pathway. They are stranded SE101 length reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Treatments
Tobacco Acid Pyrophosphatase for 1 hour
Nucleic acid type
RNA
Depleted in
rRNA
Size range
<200
Fragmentation methods
see document
Strand specificity
Strand-specific (forward)

Attribution

ENCODE3 project
Lab
Thomas Gingeras, CSHL
Award
U54HG007004 (Thomas Gingeras, CSHL)
Project
ENCODE
External resources
Date submitted
April 2, 2015
Date released
January 8, 2015
Reference Epigenome
ENCSR372BDU 
Tags
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Isogenic replicates

Isogenic replicate
Technical replicate
Summary
Biosample
Library
11Homo sapiens female embryo (5 days) neural progenitor in vitro differentiated cells originated from H9ENCBS018TPTENCLB090HYB
21Homo sapiens female embryo (5 days) neural progenitor in vitro differentiated cells originated from H9ENCBS044KWEENCLB688VFK