Experiment summary for ENCSR806QUX
doi:10.17989/ENCSR806QUX
Summary
- Status
- released
- Assay
- ChIP-seq (TF ChIP-seq)
- Target
- rec-8
- Biosample summary
- Caenorhabditis elegans strain YL581 whole organism hermaphrodite young adult 50 hours post synchronization at L1 larva starved after bleaching stage genetically modified (insertion) using bombardment targeting C. elegans rec-8
- Biosample Type
- whole organisms
- Replication type
- isogenic
- Description
- ChIP-seq of transgenic worms expressing REC-8-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
- Nucleic acid type
- DNA
- Fragmentation methods
- sonication (generic microtip)
- Size selection method
- SPRI beads
- Platform
- Illumina HiSeq 2500
- Controls
Attribution
modERN project
- Lab
- Valerie Reinke, Yale
- Award
- U41HG007355 (Robert Waterston, UW)
- Project
- modERN
- External resources
- Aliases
- kevin-white:REC-8-YL581-yAd
- Date submitted
- August 24, 2015
- Date released
- May 10, 2016
- Submitter comment
- ENCFF764NPT, ENCFF134RWL, ENCFF340RDB, ENCFF605MHW were revoked because a software bug accidentally truncated the file content. The submitters will provide replacement files.
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Modifications | Antibody | Library |
|---|---|---|---|---|---|---|
| 1 | 1 | Caenorhabditis elegans strain YL581 hermaphrodite young adult 50 hours post synchronization at L1 larva starved after bleaching stage whole organism genetically modified (insertion) using bombardment targeting C. elegans rec-8 | ENCBS758HOQ | ENCGM460KNI | ENCAB728YTO | ENCLB376WGN |
| 2 | 1 | Caenorhabditis elegans strain YL581 hermaphrodite young adult 50 hours post synchronization at L1 larva starved after bleaching stage whole organism genetically modified (insertion) using bombardment targeting C. elegans rec-8 | ENCBS695VIL | ENCGM460KNI | ENCAB728YTO | ENCLB537DFT |