Experiment summary for ENCSR806JUF
doi:10.17989/ENCSR806JUF
Summary
- Status
- released
- Assay
- ChIP-seq (TF ChIP-seq)
- Target
- B0310.2
- Biosample summary
- Caenorhabditis elegans strain OP642 (unc-119 (tm4063) III; wgIs642) whole organism early embryo 0 hours post synchronization using egg bleaching genetically modified (insertion) using bombardment targeting C. elegans B0310.2
- Biosample Type
- whole organisms
- Replication type
- isogenic
- Description
- ChIP-seq of transgenic worms expressing B0310.2-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
- Nucleic acid type
- DNA
- Fragmentation methods
- sonication (generic microtip)
- Size selection method
- SPRI beads
- Platform
- Illumina HiSeq 4000
- Controls
Attribution
modERN project
- Lab
- Valerie Reinke, Yale
- Award
- U41HG007355 (Robert Waterston, UW)
- Project
- modERN
- External resources
- Aliases
- kevin-white:B0310.2-OP642-EE
- Date submitted
- October 4, 2016
- Date released
- October 10, 2016
- Submitter comment
- ENCFF054USF, ENCFF986RVJ, ENCFF858TYG, ENCFF538TGZ were revoked because a software bug accidentally truncated the file content. The submitters will provide replacement files.
- Factorbook
Encyclopedia Integration
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Modifications | Antibody | Library |
|---|---|---|---|---|---|---|
| 2 | 1 | Caenorhabditis elegans strain OP642 (unc-119 (tm4063) III; wgIs642) mixed sex early embryo 0 hours post synchronization using egg bleaching whole organism genetically modified (insertion) using bombardment targeting C. elegans B0310.2 | ENCBS760ECQ | ENCGM246FWM | ENCAB728YTO | ENCLB712JUA |
| 1 | 1 | Caenorhabditis elegans strain OP642 (unc-119 (tm4063) III; wgIs642) mixed sex early embryo 0 hours post synchronization using egg bleaching whole organism genetically modified (insertion) using bombardment targeting C. elegans B0310.2 | ENCBS434FBU | ENCGM246FWM | ENCAB728YTO | ENCLB119EOG |