Experiment summary for ENCSR805GAD
doi:10.17989/ENCSR805GAD
Summary
- Status
- released
- Assay
- ChIP-seq (Control ChIP-seq)
- Control type
- input library
- Biosample summary
- Caenorhabditis elegans strain OP56 (unc-119(ed3) III; wgIs56) whole organism hermaphrodite L1 larva 6 hours post synchronization at L1 larva starved after bleaching stage genetically modified (insertion) using bombardment targeting C. elegans elt-2
- Biosample Type
- whole organisms
- Replication type
- unreplicated
- Description
- This is the ChIP-seq control of transgenic worms expressing ELT-2-eGFP fusion proteins.
- Nucleic acid type
- DNA
- Fragmentation methods
- sonication (generic microtip)
- Size selection method
- SPRI beads
- Platform
- Illumina HiSeq 4000, Illumina HiSeq 2500
Attribution
modERN project
- Lab
- Valerie Reinke, Yale
- Award
- U41HG007355 (Robert Waterston, UW)
- Project
- modERN
- External resources
- Aliases
- kevin-white:ELT-2-OP56-L1-INPUT
- Date submitted
- May 9, 2016
- Date released
- September 29, 2016
- Submitter comment
- This control did not have enough reads. The inputs were resequenced along with the IPs deeper, using the same libraries. The new files have been uploaded and supersede the older archived files.
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Modifications | Library |
---|---|---|---|---|---|
1 | 1 | Caenorhabditis elegans strain OP56 (unc-119(ed3) III; wgIs56) hermaphrodite L1 larva 6 hours post synchronization at L1 larva starved after bleaching stage whole organism genetically modified (insertion) using bombardment targeting C. elegans elt-2 | ENCBS885YPC | ENCGM676QSB | ENCLB223OKS |