Experiment summary for ENCSR803XFA
doi:10.17989/ENCSR803XFA
Summary
- Status
- released
- Assay
- icSHAPE
- Control type
- control
- Biosample summary
- Homo sapiens K562 treated with dimethyl sulfoxide
- Biosample Type
- cell line
- Replication type
- isogenic
- Description
- icSHAPE control (DMSO) on K562 immortalized cell line
- Treatments
- dimethyl sulfoxide (CHEBI:28262)
- Nucleic acid type
- polyadenylated mRNA
- Size range
- >200
- Strand specificity
- Strand-specific
- Library construction platform
- Illumina NextSeq 500
- Platform
- Illumina NextSeq 500
Attribution
ENCODE4 project
- Lab
- Rob Spitale, UCI
- Award
- UM1HG009443 (Barbara Wold, Caltech)
- Project
- ENCODE
- External resources
- Date submitted
- November 5, 2019
- Date released
- May 13, 2019
- Submitter comment
- Data will be reprocessed using an updated GENCODE annotation version once the ENCODE4 version has been decided.
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Library |
|---|---|---|---|---|
| 1 | 1 | Homo sapiens K562 cell line treated with dimethyl sulfoxide | ENCBS717VYS | ENCLB418JYU |
| 2 | 1 | Homo sapiens K562 cell line treated with dimethyl sulfoxide | ENCBS453AZN | ENCLB577WZB |
| 3 | 1 | Homo sapiens K562 cell line treated with dimethyl sulfoxide | ENCBS698OWO | ENCLB510CCS |