Experiment summary for ENCSR796ITY
doi:10.17989/ENCSR796ITY
Summary
- Status
- released
- Assay
- ChIP-seq (TF ChIP-seq)
- Target
- NFIC
- Biosample summary
- Homo sapiens K562
- Biosample Type
- cell line
- Replication type
- isogenic
- Description
- NFIC ChIP-seq on human K562
- Nucleic acid type
- DNA
- Size range
- 450-650
- Platform
- Illumina HiSeq 2000, Illumina HiSeq 4000
- Controls
Attribution
ENCODE3 project
- Lab
- Michael Snyder, Stanford
- Award
- U54HG006996 (Michael Snyder, Stanford)
- Project
- ENCODE
- External resources
- References
- Aliases
- michael-snyder:ChIPss-519
- Date submitted
- May 3, 2016
- Date released
- May 17, 2017
- Annotation (gkmsvm-model)
- Annotation (physical modeling)
- Annotation (BPNet-model)
- Submitter comment
- Please note that the 'mixed platform' warning comes from the archived fastqs that were sequenced on the HiSeq2000 platform that if used, should be paired with the matching HiSeq2000 control ENCSR173USI. The pipeline was run on the fastqs and controls sequenced on the HiSeq4000 platform for consistency.
- Tags
- Factorbook
Encyclopedia Integration
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Antibody | Library |
|---|---|---|---|---|---|
| 2 | 1 | Homo sapiens K562 cell line | ENCBS357NWO | ENCAB272JJF | ENCLB642HDH |
| 1 | 1 | Homo sapiens K562 cell line | ENCBS298PAM | ENCAB272JJF | ENCLB244LCH |