Experiment summary for ENCSR796ITY

doi:10.17989/ENCSR796ITY

Summary

Status
released
Assay
ChIP-seq (TF ChIP-seq)
Target
NFIC
Biosample summary
Homo sapiens K562
Biosample Type
cell line
Replication type
isogenic
Description
NFIC ChIP-seq on human K562
Nucleic acid type
DNA
Size range
450-650

Attribution

ENCODE3 project
Lab
Michael Snyder, Stanford
Award
U54HG006996 (Michael Snyder, Stanford)
Project
ENCODE
External resources
Aliases
michael-snyder:ChIPss-519
Date submitted
May 3, 2016
Date released
May 17, 2017
Annotation (gkmsvm-model)
Annotation (physical modeling)
Annotation (BPNet-model)
Submitter comment
Please note that the 'mixed platform' warning comes from the archived fastqs that were sequenced on the HiSeq2000 platform that if used, should be paired with the matching HiSeq2000 control ENCSR173USI. The pipeline was run on the fastqs and controls sequenced on the HiSeq4000 platform for consistency.
Tags
Search for all Experiment with internal tag RegulomeDB_1_0Search for all Experiment with internal tag RegulomeDB_2_0Search for all Experiment with internal tag ENCYCLOPEDIAv2Search for all Experiment with internal tag RegulomeDB_2_1Search for all Experiment with internal tag RegulomeDB_2_2

Encyclopedia Integration

Isogenic replicates

Isogenic replicate
Technical replicate
Summary
Biosample
Antibody
Library
21Homo sapiens K562 cell lineENCBS357NWOENCAB272JJFENCLB642HDH
11Homo sapiens K562 cell lineENCBS298PAMENCAB272JJFENCLB244LCH