Experiment summary for ENCSR780HBP
doi:10.17989/ENCSR780HBP
Summary
- Status
- released
- Assay
- ATAC-seq
- Biosample summary
- Mus musculus strain C57BL/6J dendritic cell originated from whole organism treated with 100 ng/mL lipopolysaccharide for 6 hours
- Biosample Type
- in vitro differentiated cells
- Replication type
- isogenic
- Description
- ATAC-seq
- Treatments
- 100 ng/mL lipopolysaccharide (CHEBI:16412) for 6 hours
- Nucleic acid type
- DNA
- Size range
- 175-500
- Extraction method
- ATAC-seq (Greenleaf & Chang Lab protocol)
- Platform
- Illumina NextSeq 500
Attribution
Genomics of Gene Regulation Project
- Lab
- Manuel Garber, UMass
- Award
- U01HG007910 (Jeremy Luban, UMass)
- Project
- GGR
- External resources
- Aliases
- manuel-garber:M02_BMDC_ATAC_Lps_6h_ATAC-seq
- Date submitted
- January 18, 2017
- Date released
- January 19, 2017
- Annotation (gkmsvm-model)
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Library |
|---|---|---|---|---|
| 1 | 1 | Mus musculus strain C57BL/6J dendritic in vitro differentiated cells originated from whole organism treated with 100 ng/mL lipopolysaccharide for 6 hours | ENCBS132PYZ | ENCLB690QLA |
| 2 | 1 | Mus musculus strain C57BL/6J dendritic in vitro differentiated cells originated from whole organism treated with 100 ng/mL lipopolysaccharide for 6 hours | ENCBS139NUH | ENCLB952DVH |