Experiment summary for ENCSR779QAB
doi:10.17989/ENCSR779QAB
Summary
- Status
- released
- Assay
- ChIA-PET
- Target
- CTCF
- Biosample summary
- Homo sapiens WTC11 genetically modified (insertion) using CRISPR
- Biosample Type
- cell line
- Replication type
- isogenic
- Description
- CTCF ChIA-PET in WTC11_clone28
- Nucleic acid type
- DNA
- Size range
- 350-600 [1-1]300-600 [2-1]
- Lysis method
- SDS
- Fragmentation methods
- sonication (Branson Sonifier 250)
- Size selection method
- BluePippin
- Platform
- Illumina MiSeq, Illumina NovaSeq 6000
Attribution
ENCODE4 project
- Lab
- Charles Lee
- Award
- 3UM1HG009409-04S1 (Charles Lee)
- Project
- ENCODE
- External resources
- Aliases
- yijun-ruan:WTC11_clone28_CTCF
- Date released
- September 9, 2021
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Modifications | Antibody | Library |
|---|---|---|---|---|---|---|
| 1 | 1 | Homo sapiens WTC11 cell line genetically modified (insertion) using CRISPR | ENCBS019CAD | ENCGM701IFJ | ENCAB635SXP | ENCLB745IPL |
| 2 | 1 | Homo sapiens WTC11 cell line genetically modified (insertion) using CRISPR | ENCBS628BTJ | ENCGM701IFJ | ENCAB635SXP | ENCLB777MDG |