Experiment summary for ENCSR763OGS
doi:10.17989/ENCSR763OGS
Summary
- Status
- released
- Assay
- RNA-seq (total RNA-seq)
- Biosample summary
- Drosophila melanogaster ML-DmBG3-c2 treated with 1 μM 20-hydroxyecdysone for 7 hours
- Biosample Type
- cell line
- Replication type
- isogenic
- Description
- RNA-seq on ribo-depleted total RNA from ML-DmBG3-c2
- Treatments
- 1 μM 20-hydroxyecdysone (CHEBI:16587) for 7 hours
- Nucleic acid type
- RNA
- Depleted in
- rRNA
- Size range
- >200
- Extraction method
- Trizol
- Fragmentation methods
- chemical (generic)
- Size selection method
- SPRI beads
- Strand specificity
- Strand-specific (reverse)
- Spike-ins datasets
- ENCSR130DDI
- Platform
- Illumina HiSeq 2000
Attribution
modENCODE Project
- Lab
- Brenton Graveley, UConn
- Award
- U54HG006994 (Susan Celniker, LBNL)
- Project
- modENCODE
- References
- Aliases
- brenton-graveley:E-BS612-BS617
- Date submitted
- March 31, 2014
- Date released
- March 31, 2014
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Library |
|---|---|---|---|---|
| 2 | 1 | Drosophila melanogaster ML-DmBG3-c2 cell line treated with 1 μM 20-hydroxyecdysone for 7 hours | ENCBS303TQC | ENCLB238CGH |
| 1 | 1 | Drosophila melanogaster ML-DmBG3-c2 cell line treated with 1 μM 20-hydroxyecdysone for 7 hours | ENCBS987RFJ | ENCLB468LUM |