Experiment summary for ENCSR757OPC
doi:10.17989/ENCSR757OPC
Summary
- Status
- released
- Assay
- ChIP-seq (TF ChIP-seq)
- Target
- vab-15
- Biosample summary
- Caenorhabditis elegans strain XIL99 whole organism L1 larva at L1 larva starved after bleaching stage genetically modified (insertion) using CRISPR targeting C. elegans vab-15
- Biosample Type
- whole organisms
- Replication type
- isogenic
- Description
- ChIP-seq of transgenic worms expressing VAB-15-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
- Nucleic acid type
- DNA
- Fragmentation methods
- sonication (generic microtip)
- Size selection method
- SPRI beads
- Platform
- Illumina HiSeq 4000
- Controls
Attribution
modERN project
- Lab
- Valerie Reinke, Yale
- Award
- U41HG007355 (Robert Waterston, UW)
- Project
- modERN
- External resources
- Aliases
- kevin-white:VAB-15-XIL99-L1
- Date submitted
- October 5, 2017
- Date released
- November 6, 2017
- Factorbook
Encyclopedia Integration
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Modifications | Antibody | Library |
|---|---|---|---|---|---|---|
| 1 | 1 | Caenorhabditis elegans strain XIL99 mixed sex L1 larva at L1 larva starved after bleaching stage whole organism genetically modified (insertion) using CRISPR targeting C. elegans vab-15 | ENCBS096ZAK | ENCGM896RUA | ENCAB728YTO | ENCLB028PZX |
| 2 | 1 | Caenorhabditis elegans strain XIL99 mixed sex L1 larva at L1 larva starved after bleaching stage whole organism genetically modified (insertion) using CRISPR targeting C. elegans vab-15 | ENCBS564SNS | ENCGM896RUA | ENCAB728YTO | ENCLB350ABJ |