Experiment summary for ENCSR748WWE
doi:10.17989/ENCSR748WWE
Summary
- Status
- released
- Assay
- ChIP-seq (TF ChIP-seq)
- Target
- psq
- Biosample summary
- Drosophila melanogaster strain psq-GFP whole organism wandering third instar larva genetically modified (insertion) using site-specific recombination targeting D. melanogaster psq
- Biosample Type
- whole organisms
- Replication type
- isogenic
- Description
- ChIP-seq on transgenic flies expressing psq-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
- Nucleic acid type
- DNA
- Size range
- 200-800
- Fragmentation methods
- sonication (Bioruptor generic)
- Size selection method
- SPRI beads
- Platform
- Illumina HiSeq 2500
- Controls
Attribution
modERN project
- Lab
- Kevin White, UChicago
- Award
- U41HG007355 (Robert Waterston, UW)
- Project
- modERN
- External resources
- Aliases
- kevin-white:psq-GFP-2
- Date submitted
- January 13, 2016
- Date released
- November 22, 2017
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Modifications | Antibody | Library |
|---|---|---|---|---|---|---|
| 3 | 1 | Drosophila melanogaster strain psq-GFP mixed sex wandering third instar larva whole organism genetically modified (insertion) using site-specific recombination targeting D. melanogaster psq | ENCBS373BQJ | ENCGM858RIG | ENCAB728YTO | ENCLB526EJL |
| 2 | 1 | Drosophila melanogaster strain psq-GFP mixed sex wandering third instar larva whole organism genetically modified (insertion) using site-specific recombination targeting D. melanogaster psq | ENCBS116FAX | ENCGM858RIG | ENCAB728YTO | ENCLB637TYQ |
| 1 | 1 | Drosophila melanogaster strain psq-GFP mixed sex wandering third instar larva whole organism genetically modified (insertion) using site-specific recombination targeting D. melanogaster psq | ENCBS633YJG | ENCGM858RIG | ENCAB728YTO | ENCLB404GMY |