Experiment summary for ENCSR745QHO
doi:10.17989/ENCSR745QHO
Summary
- Status
- released
- Assay
- ChIP-seq (Control ChIP-seq)
- Control type
- input library
- Biosample summary
- Caenorhabditis elegans strain OP517 (unc-119(tm4063) III; wgIs517) whole organism late embryo 4 hours post synchronization using egg bleaching genetically modified (insertion) using bombardment targeting C. elegans sox-4
- Biosample Type
- whole organisms
- Replication type
- unreplicated
- Description
- This is the ChIP-seq control of transgenic worms expressing SOX-4-eGFP fusion proteins.
- Nucleic acid type
- DNA
- Fragmentation methods
- sonication (generic microtip)
- Size selection method
- SPRI beads
- Platform
- Illumina HiSeq 2000, Illumina HiSeq 4000
Attribution
modERN project
- Lab
- Valerie Reinke, Yale
- Award
- U41HG007355 (Robert Waterston, UW)
- Project
- modERN
- External resources
- Aliases
- kevin-white:SOX-4-OP517-LE-INPUT
- Date submitted
- October 6, 2017
- Date released
- November 22, 2017
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Modifications | Library |
---|---|---|---|---|---|
1 | 1 | Caenorhabditis elegans strain OP517 (unc-119(tm4063) III; wgIs517) mixed sex late embryo 4 hours post synchronization using egg bleaching whole organism genetically modified (insertion) using bombardment targeting C. elegans sox-4 | ENCBS389BGW | ENCGM544OTR | ENCLB535EVA |