Experiment summary for ENCSR742SAT
doi:10.17989/ENCSR742SAT
Summary
- Status
- released
- Assay
- HiC (in situ Hi-C)
- Biosample summary
- Homo sapiens GM12878
- Biosample Type
- cell line
- Replication type
- unreplicated
- Description
- pellet GM12878 MboI experiment
- Nucleic acid type
- DNA
- Library starting quantity
- 2000000cells
- Size range
- 300-500
- Fragmentation methods
- chemical (MboI restriction)
- Size selection method
- SPRI beads
- Platform
- Illumina HiSeq 2500
Attribution
ENCODE4 project
- Lab
- Erez Aiden, Baylor
- Award
- UM1HG009375 (Erez Aiden, Baylor)
- Project
- ENCODE
- External resources
- Aliases
- erez-aiden:pellet-experiment-GM12878
- Date submitted
- April 19, 2018
- Date released
- October 30, 2018
- Submitter comment
- Due to the sequencing depth of the dataset the delta step of the pipeline was excluded during processsing. This dataset therefore does not have some long range chromatin interactions, chromatin stripes, and topologically associated domains outputs
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Library |
|---|---|---|---|---|
| 1 | 1 | Homo sapiens GM12878 cell line | ENCBS202PFA | ENCLB145APE |