Experiment summary for ENCSR740YMS

Summary

Status
released
Assay
RNA-seq (total RNA-seq)
Biosample summary
Homo sapiens gastroesophageal sphincter female adult (53 years)
Biosample Type
tissue
Replication type
unreplicated
Description
The libraries contained in this Experiment come from tissue sub-sections from the esophagogastric junction obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA > 200 nucleotides in size.
Nucleic acid type
RNA
RNA integrity number
8.2
Depleted in
rRNA
Size range
>200
Lysis method
see document
Extraction method
see document
Fragmentation methods
see document
Size selection method
see document
Strand specificity
Strand-specific
Spike-ins datasets
ENCSR156CIL

Attribution

ENCODE3 project
Lab
Thomas Gingeras, CSHL
Award
U54HG007004 (Thomas Gingeras, CSHL)
Project
ENCODE
External resources
Date submitted
January 27, 2016
Date released
February 18, 2016
Related datasets
ENCSR597HBM 
Reference epigenome for human gastroesophageal sphincter (53 year old female)
Tags
Search for all Experiment with internal tag ENCYCLOPEDIAv5Search for all Experiment with internal tag ENCYCLOPEDIAv4Search for all Experiment with internal tag ENTEx

Isogenic replicates

Isogenic replicateTechnical replicateSummaryBiosampleLibrary
11female adult (53 years) gastroesophageal sphincter tissueENCBS616IQRENCLB414WBQ