Experiment summary for ENCSR733GMN
doi:10.17989/ENCSR733GMN
Summary
- Status
- released
- Assay
- shRNA knockdown followed by RNA-seq (shRNA RNA-seq)
- Control type
- control
- Biosample summary
- Drosophila melanogaster strain MTD-Gal4 whole organism embryo 0-1.5 hours post synchronization at egg laying stage
- Biosample Type
- whole organisms
- Replication type
- isogenic
- Nucleic acid type
- RNA
- Depleted in
- polyadenylated mRNA
- Size range
- 350-600
- Extraction method
- Trizol
- Fragmentation methods
- shearing (Covaris generic)
- Strand specificity
- unstranded
- Platform
- Illumina HiSeq 4000
Attribution
modERN project
- Lab
- Susan Celniker, LBNL
- Award
- U41HG007355 (Robert Waterston, UW)
- Project
- modERN
- Aliases
- susan-celniker:twi_MTD-Gal4_0-1.5
- Date submitted
- July 22, 2016
- Date released
- April 25, 2019
- Submitter comment
- Processed data is currently not available for these experiments, but will be added in the future.
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Library |
|---|---|---|---|---|
| 2 | 1 | Drosophila melanogaster strain MTD-Gal4 embryo 0-1.5 hours post synchronization at egg laying stage whole organism | ENCBS238PEA | ENCLB946RBB |
| 1 | 1 | Drosophila melanogaster strain MTD-Gal4 embryo 0-1.5 hours post synchronization at egg laying stage whole organism | ENCBS622ZKK | ENCLB536BBS |