Experiment summary for ENCSR727PIC
doi:10.17989/ENCSR727PIC
Summary
- Status
- released
- Assay
- ChIP-seq (TF ChIP-seq)
- Target
- ZNF34
- Biosample summary
- Homo sapiens HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF34
- Biosample Type
- cell line
- Replication type
- isogenic
- Description
- eGFP-ZNF34 ChIP-seq on human HEK293 cells.
- Nucleic acid type
- DNA
- Size range
- 450-650
- Platform
- Illumina HiSeq 2000, Illumina HiSeq 4000
- Controls
- ENCSR598OXI
- ENCSR300VIY
- ENCSR429LAP
- ENCSR274OGE
- ENCSR342AGU
- ENCSR688NWK
- ENCSR354FNX
- ENCSR157LMX
- ENCSR007GUS
- ENCSR049NDP
- ENCSR110ZVM
- ENCSR123TVS
- ENCSR236FPN
- ENCSR260MAS
- ENCSR278MZO
- ENCSR311DYU
- ENCSR316OQD
- ENCSR361UQO
- ENCSR398UVH
- ENCSR468NLK
- ENCSR499OOH
- ENCSR499QIO
- ENCSR523KUQ
- ENCSR537CWQ
- ENCSR603CJM
- ENCSR679WSJ
- ENCSR736BTL
- ENCSR782QKO
- ENCSR840JVQ
- ENCSR851FFP
- ENCSR860UAT
- ENCSR873PPH
Attribution
ENCODE3 project
- Lab
- Michael Snyder, Stanford
- Award
- U54HG006996 (Michael Snyder, Stanford)
- Project
- ENCODE
- External resources
- Aliases
- michael-snyder:HEK_eGFP-ZNF34_FRT_ChIP
- Date submitted
- April 27, 2016
- Date released
- March 7, 2017
- Annotation (gkmsvm-model)
- Submitter comment
- The archived libraries sequenced on HiSeq 2000 did not meet ENCODE read depth requirements. We have therefore provided more deeply sequenced data on HiSeq 4000. Note that the 'mixed platforms' warning stems from the archived HiSeq2000 files, the pipeline was run on just the HiSeq4000 files for consistency.
- Factorbook
Encyclopedia Integration
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Modifications | Antibody | Library |
---|---|---|---|---|---|---|
2 | 1 | Homo sapiens HEK293 cell line genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF34 | ENCBS916VDS | ENCGM675GJK | ENCAB976SGG | ENCLB977BDE |
1 | 1 | Homo sapiens HEK293 cell line genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF34 | ENCBS463NTZ | ENCGM675GJK | ENCAB976SGG | ENCLB702XMI |