Experiment summary for ENCSR708DGM

doi:10.17989/ENCSR708DGM

Summary

Status
released
Assay
ChIP-seq (TF ChIP-seq)
Target
JUN
Biosample summary
Homo sapiens A549 treated with 100 nM dexamethasone (agonist) for 4 hours
Biosample Type
cell line
Replication type
isogenic
Description
cJun ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 4 hours.
Treatments
100 nM dexamethasone (CHEBI:41879) for 4 hours
Nucleic acid type
DNA
Library starting quantity
7ng
Size range
>200
Fragmentation methods
sonication (Bioruptor Twin)
Size selection method
dual SPRI
Controls

Attribution

Genomics of Gene Regulation Project
Lab
Tim Reddy, Duke
Award
U01HG007900 (Tim Reddy, Duke)
Project
GGR
External resources
Aliases
tim-reddy:cJun.t4
Date submitted
December 15, 2016
Date released
December 20, 2016
Treatment Time Series
ENCSR588JLN 
Annotation (gkmsvm-model)
Annotation (BPNet-model)
Tags
Search for all Experiment with internal tag RegulomeDB_2_2Search for all Experiment with internal tag RegulomeDB_2_1

Encyclopedia Integration

Isogenic replicates

Isogenic replicate
Technical replicate
Summary
Biosample
Antibody
Library
11Homo sapiens A549 cell line treated with 100 nM dexamethasone (agonist) for 4 hoursENCBS362JCGENCAB085XKXENCLB907FIF
21Homo sapiens A549 cell line treated with 100 nM dexamethasone (agonist) for 4 hoursENCBS587DMYENCAB085XKXENCLB865UCI
31Homo sapiens A549 cell line treated with 100 nM dexamethasone (agonist) for 4 hoursENCBS309HYHENCAB085XKXENCLB185NUD