track ENCSR706YUH
compositeTrack on
type bed 3
longLabel SMARCA5 TF ChIP-seq of Homo sapiens GM12878 cell line - ENCSR706YUH
shortLabel SMARCA5 TF ChIP-seq of GM12878 ENCSR706YUH
visibility full
pennantIcon https://www.encodeproject.org/static/img/pennant-encode.png https://www.encodeproject.org/ "This trackhub was automatically generated from the ENCODE files and metadata found at the ENCODE portal"
subGroup1 view Views aOIDR=Optimal_IDR_thresholded_peaks bIDRT=IDR_thresholded_peaks cCIDR=Conservative_IDR_thresholded_peaks dRPKS=Pseudoreplicated_IDR_thresholded_peaks ePKS=Peaks gSPV=Signal_p-value fFCOC=Fold_change_over_control hSIG=Signal seqCS=Sequence_contribution_scores
subGroup2 BS Biosample GM12878=GM12878
subGroup3 EXP Experiment ENCSR706YUH=ENCSR706YUH
subGroup4 REP Replicates pool=Pooled rep01=Replicate_1 rep02=Replicate_2
subGroup5 TARG Targets SMARCA5=SMARCA5
sortOrder BS=+ TARG=+ REP=+ view=+
dimensions dimA=REP
dimensionAchecked pool
track ENCSR706YUH_aOIDR_view
parent ENCSR706YUH on
view aOIDR
type bigNarrowPeak
visibility dense
spectrum on
signalFilter 0
qValueFilter 0
track ENCFF640RPR
parent ENCSR706YUH_aOIDR_view on
bigDataUrl https://encode-public.s3.amazonaws.com/2017/06/07/9c28a564-2270-4d96-9642-54d44436a66a/ENCFF640RPR.bigBed
longLabel SMARCA5 TF ChIP-seq of GM12878 optimal IDR thresholded peaks pool ENCSR706YUH - ENCFF640RPR
shortLabel pool oIDR pk
type bigNarrowPeak
subGroups BS=GM12878 EXP=ENCSR706YUH REP=pool TARG=SMARCA5 view=aOIDR
metadata biosample="Homo sapiens GM12878 ENCBS397JTN ENCBS436SAI" experiment="ENCSR706YUH" targets="SMARCA5" file download="ENCFF640RPR" laboratory="Michael Snyder Stanford" replicates (bio_tech)="1_1, 2_1"
track ENCSR706YUH_bIDRT_view
parent ENCSR706YUH on
view bIDRT
type bigNarrowPeak
visibility dense
spectrum on
signalFilter 0
qValueFilter 0
track ENCFF803WCP
parent ENCSR706YUH_bIDRT_view on
bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/02/94e5f2e3-61df-4ac6-adc7-b54f57699377/ENCFF803WCP.bigBed
longLabel SMARCA5 TF ChIP-seq of GM12878 IDR thresholded peaks pool ENCSR706YUH - ENCFF803WCP
shortLabel pool IDRt pk
type bigNarrowPeak
subGroups BS=GM12878 EXP=ENCSR706YUH REP=pool TARG=SMARCA5 view=bIDRT
metadata biosample="Homo sapiens GM12878 ENCBS436SAI" experiment="ENCSR706YUH" targets="SMARCA5" file download="ENCFF803WCP" laboratory="Michael Snyder Stanford" replicate (bio_tech)="2_1"
track ENCFF135MPF
parent ENCSR706YUH_bIDRT_view on
bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/02/c3bb86b2-8157-4cd0-8334-a267434aac2f/ENCFF135MPF.bigBed
longLabel SMARCA5 TF ChIP-seq of GM12878 IDR thresholded peaks pool ENCSR706YUH - ENCFF135MPF
shortLabel pool IDRt pk
type bigNarrowPeak
subGroups BS=GM12878 EXP=ENCSR706YUH REP=pool TARG=SMARCA5 view=bIDRT
metadata biosample="Homo sapiens GM12878 ENCBS397JTN" experiment="ENCSR706YUH" targets="SMARCA5" file download="ENCFF135MPF" laboratory="Michael Snyder Stanford" replicate (bio_tech)="1_1"
track ENCFF327LDR
parent ENCSR706YUH_bIDRT_view on
bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/02/f3a73ccd-1cdb-459d-9723-ad0a0de7547a/ENCFF327LDR.bigBed
longLabel SMARCA5 TF ChIP-seq of GM12878 IDR thresholded peaks pool ENCSR706YUH - ENCFF327LDR
shortLabel pool IDRt pk
type bigNarrowPeak
subGroups BS=GM12878 EXP=ENCSR706YUH REP=pool TARG=SMARCA5 view=bIDRT
metadata biosample="Homo sapiens GM12878 ENCBS397JTN ENCBS436SAI" experiment="ENCSR706YUH" targets="SMARCA5" file download="ENCFF327LDR" laboratory="Michael Snyder Stanford" replicates (bio_tech)="1_1, 2_1"
track ENCSR706YUH_cCIDR_view
parent ENCSR706YUH on
view cCIDR
type bigNarrowPeak
visibility hide
spectrum on
signalFilter 0
qValueFilter 0
track ENCFF697SGW
parent ENCSR706YUH_cCIDR_view on
bigDataUrl https://encode-public.s3.amazonaws.com/2017/06/07/a296b778-cafe-4ea8-865f-661dd45b7454/ENCFF697SGW.bigBed
longLabel SMARCA5 TF ChIP-seq of GM12878 conservative IDR thresholded peaks pool ENCSR706YUH - ENCFF697SGW
shortLabel pool cIDR pk
type bigNarrowPeak
subGroups BS=GM12878 EXP=ENCSR706YUH REP=pool TARG=SMARCA5 view=cCIDR
metadata biosample="Homo sapiens GM12878 ENCBS397JTN ENCBS436SAI" experiment="ENCSR706YUH" targets="SMARCA5" file download="ENCFF697SGW" laboratory="Michael Snyder Stanford" replicates (bio_tech)="1_1, 2_1"
track ENCFF193JAS
parent ENCSR706YUH_cCIDR_view on
bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/02/50074080-fa5d-48ef-8890-9e73f455c0d1/ENCFF193JAS.bigBed
longLabel SMARCA5 TF ChIP-seq of GM12878 conservative IDR thresholded peaks pool ENCSR706YUH - ENCFF193JAS
shortLabel pool cIDR pk
type bigNarrowPeak
subGroups BS=GM12878 EXP=ENCSR706YUH REP=pool TARG=SMARCA5 view=cCIDR
metadata biosample="Homo sapiens GM12878 ENCBS397JTN ENCBS436SAI" experiment="ENCSR706YUH" targets="SMARCA5" file download="ENCFF193JAS" laboratory="Michael Snyder Stanford" replicates (bio_tech)="1_1, 2_1"
track ENCSR706YUH_gSPV_view
parent ENCSR706YUH on
view gSPV
type bigWig
visibility hide
viewLimits 0:10
autoScale off
maxHeightPixels 64:18:8
windowingFunction mean+whiskers
track ENCFF496ZEL
parent ENCSR706YUH_gSPV_view off
bigDataUrl https://encode-public.s3.amazonaws.com/2017/06/07/aa06e436-1144-4447-b249-40cf4fe07546/ENCFF496ZEL.bigWig
longLabel SMARCA5 TF ChIP-seq of GM12878 signal p-value rep1 ENCSR706YUH - ENCFF496ZEL
shortLabel rep1 pval sig
type bigWig
subGroups BS=GM12878 EXP=ENCSR706YUH REP=rep01 TARG=SMARCA5 view=gSPV
metadata biosample="Homo sapiens GM12878 ENCBS397JTN" experiment="ENCSR706YUH" targets="SMARCA5" file download="ENCFF496ZEL" laboratory="Michael Snyder Stanford" replicate (bio_tech)="1_1"
track ENCFF108TSF
parent ENCSR706YUH_gSPV_view off
bigDataUrl https://encode-public.s3.amazonaws.com/2017/06/07/12a03a7f-f606-4c39-bc24-0fe3aaa4a4d4/ENCFF108TSF.bigWig
longLabel SMARCA5 TF ChIP-seq of GM12878 signal p-value rep2 ENCSR706YUH - ENCFF108TSF
shortLabel rep2 pval sig
type bigWig
subGroups BS=GM12878 EXP=ENCSR706YUH REP=rep02 TARG=SMARCA5 view=gSPV
metadata biosample="Homo sapiens GM12878 ENCBS436SAI" experiment="ENCSR706YUH" targets="SMARCA5" file download="ENCFF108TSF" laboratory="Michael Snyder Stanford" replicate (bio_tech)="2_1"
track ENCFF933PRL
parent ENCSR706YUH_gSPV_view on
bigDataUrl https://encode-public.s3.amazonaws.com/2017/06/07/bed3a6da-81af-4c42-9409-781a742c091c/ENCFF933PRL.bigWig
longLabel SMARCA5 TF ChIP-seq of GM12878 signal p-value pool ENCSR706YUH - ENCFF933PRL
shortLabel pool pval sig
type bigWig
subGroups BS=GM12878 EXP=ENCSR706YUH REP=pool TARG=SMARCA5 view=gSPV
metadata biosample="Homo sapiens GM12878 ENCBS397JTN ENCBS436SAI" experiment="ENCSR706YUH" targets="SMARCA5" file download="ENCFF933PRL" laboratory="Michael Snyder Stanford" replicates (bio_tech)="1_1, 2_1"
track ENCFF964KJX
parent ENCSR706YUH_gSPV_view off
bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/02/ed894bb5-2f89-42c8-9d3f-f3d3fcaa4866/ENCFF964KJX.bigWig
longLabel SMARCA5 TF ChIP-seq of GM12878 signal p-value rep1 ENCSR706YUH - ENCFF964KJX
shortLabel rep1 pval sig
type bigWig
subGroups BS=GM12878 EXP=ENCSR706YUH REP=rep01 TARG=SMARCA5 view=gSPV
metadata biosample="Homo sapiens GM12878 ENCBS397JTN" experiment="ENCSR706YUH" targets="SMARCA5" file download="ENCFF964KJX" laboratory="Michael Snyder Stanford" replicate (bio_tech)="1_1"
track ENCFF893NLE
parent ENCSR706YUH_gSPV_view off
bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/02/d18e29e0-7fa4-427a-927d-751b259a4eb6/ENCFF893NLE.bigWig
longLabel SMARCA5 TF ChIP-seq of GM12878 signal p-value rep2 ENCSR706YUH - ENCFF893NLE
shortLabel rep2 pval sig
type bigWig
subGroups BS=GM12878 EXP=ENCSR706YUH REP=rep02 TARG=SMARCA5 view=gSPV
metadata biosample="Homo sapiens GM12878 ENCBS436SAI" experiment="ENCSR706YUH" targets="SMARCA5" file download="ENCFF893NLE" laboratory="Michael Snyder Stanford" replicate (bio_tech)="2_1"
track ENCFF349QKS
parent ENCSR706YUH_gSPV_view on
bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/02/05c9a6d0-079e-4908-867f-99511c3dfc0e/ENCFF349QKS.bigWig
longLabel SMARCA5 TF ChIP-seq of GM12878 signal p-value pool ENCSR706YUH - ENCFF349QKS
shortLabel pool pval sig
type bigWig
subGroups BS=GM12878 EXP=ENCSR706YUH REP=pool TARG=SMARCA5 view=gSPV
metadata biosample="Homo sapiens GM12878 ENCBS397JTN ENCBS436SAI" experiment="ENCSR706YUH" targets="SMARCA5" file download="ENCFF349QKS" laboratory="Michael Snyder Stanford" replicates (bio_tech)="1_1, 2_1"
track ENCSR706YUH_fFCOC_view
parent ENCSR706YUH on
view fFCOC
type bigWig
visibility full
viewLimits 0:10
autoScale off
maxHeightPixels 64:18:8
windowingFunction mean+whiskers
track ENCFF437ZLO
parent ENCSR706YUH_fFCOC_view off
bigDataUrl https://encode-public.s3.amazonaws.com/2017/06/07/9841123b-b1a7-4911-936a-49314bf9066e/ENCFF437ZLO.bigWig
longLabel SMARCA5 TF ChIP-seq of GM12878 fold change over control rep1 ENCSR706YUH - ENCFF437ZLO
shortLabel rep1 foldchg
type bigWig
subGroups BS=GM12878 EXP=ENCSR706YUH REP=rep01 TARG=SMARCA5 view=fFCOC
metadata biosample="Homo sapiens GM12878 ENCBS397JTN" experiment="ENCSR706YUH" targets="SMARCA5" file download="ENCFF437ZLO" laboratory="Michael Snyder Stanford" replicate (bio_tech)="1_1"
track ENCFF885UGW
parent ENCSR706YUH_fFCOC_view off
bigDataUrl https://encode-public.s3.amazonaws.com/2017/06/07/59825900-c385-4fc5-bd51-dde8adc9ccf8/ENCFF885UGW.bigWig
longLabel SMARCA5 TF ChIP-seq of GM12878 fold change over control rep2 ENCSR706YUH - ENCFF885UGW
shortLabel rep2 foldchg
type bigWig
subGroups BS=GM12878 EXP=ENCSR706YUH REP=rep02 TARG=SMARCA5 view=fFCOC
metadata biosample="Homo sapiens GM12878 ENCBS436SAI" experiment="ENCSR706YUH" targets="SMARCA5" file download="ENCFF885UGW" laboratory="Michael Snyder Stanford" replicate (bio_tech)="2_1"
track ENCFF562RHH
parent ENCSR706YUH_fFCOC_view on
bigDataUrl https://encode-public.s3.amazonaws.com/2017/06/07/856fe315-d5b9-48f6-ac0c-2b0fea71c9f6/ENCFF562RHH.bigWig
longLabel SMARCA5 TF ChIP-seq of GM12878 fold change over control pool ENCSR706YUH - ENCFF562RHH
shortLabel pool foldchg
type bigWig
subGroups BS=GM12878 EXP=ENCSR706YUH REP=pool TARG=SMARCA5 view=fFCOC
metadata biosample="Homo sapiens GM12878 ENCBS397JTN ENCBS436SAI" experiment="ENCSR706YUH" targets="SMARCA5" file download="ENCFF562RHH" laboratory="Michael Snyder Stanford" replicates (bio_tech)="1_1, 2_1"
track ENCFF376PZQ
parent ENCSR706YUH_fFCOC_view off
bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/02/7a847d57-2a8a-4a34-971d-89065fff5491/ENCFF376PZQ.bigWig
longLabel SMARCA5 TF ChIP-seq of GM12878 fold change over control rep1 ENCSR706YUH - ENCFF376PZQ
shortLabel rep1 foldchg
type bigWig
subGroups BS=GM12878 EXP=ENCSR706YUH REP=rep01 TARG=SMARCA5 view=fFCOC
metadata biosample="Homo sapiens GM12878 ENCBS397JTN" experiment="ENCSR706YUH" targets="SMARCA5" file download="ENCFF376PZQ" laboratory="Michael Snyder Stanford" replicate (bio_tech)="1_1"
track ENCFF365NEJ
parent ENCSR706YUH_fFCOC_view off
bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/02/97c3ff80-55d7-464a-9748-0225de90f61b/ENCFF365NEJ.bigWig
longLabel SMARCA5 TF ChIP-seq of GM12878 fold change over control rep2 ENCSR706YUH - ENCFF365NEJ
shortLabel rep2 foldchg
type bigWig
subGroups BS=GM12878 EXP=ENCSR706YUH REP=rep02 TARG=SMARCA5 view=fFCOC
metadata biosample="Homo sapiens GM12878 ENCBS436SAI" experiment="ENCSR706YUH" targets="SMARCA5" file download="ENCFF365NEJ" laboratory="Michael Snyder Stanford" replicate (bio_tech)="2_1"
track ENCFF461PLB
parent ENCSR706YUH_fFCOC_view on
bigDataUrl https://encode-public.s3.amazonaws.com/2020/12/02/ab6bdcda-91a7-4f56-9a85-68c526ffa0d2/ENCFF461PLB.bigWig
longLabel SMARCA5 TF ChIP-seq of GM12878 fold change over control pool ENCSR706YUH - ENCFF461PLB
shortLabel pool foldchg
type bigWig
subGroups BS=GM12878 EXP=ENCSR706YUH REP=pool TARG=SMARCA5 view=fFCOC
metadata biosample="Homo sapiens GM12878 ENCBS397JTN ENCBS436SAI" experiment="ENCSR706YUH" targets="SMARCA5" file download="ENCFF461PLB" laboratory="Michael Snyder Stanford" replicates (bio_tech)="1_1, 2_1"