Experiment summary for ENCSR701SED

Summary

Status
released
Assay
ChIP-seq (TF ChIP-seq)
Target
OSR1
Biosample summary
Homo sapiens SK-N-SH genetically modified (insertion) using CRISPR targeting H. sapiens OSR1 treated with 6 μM all-trans-retinoic acid for 48 hours
Biosample Type
cell line
Replication type
isogenic
Description
eGFP-OSR1 ChIP-seq on human SK-N-SH
Treatments
6 μM all-trans-retinoic acid (CHEBI:15367) for 48 hours
Nucleic acid type
DNA
Size range
250-450
Fragmentation methods
sonication (Bioruptor Pico)
Controls

Attribution

ENCODE4 project
Lab
Michael Snyder, Stanford
Award
UM1HG009442 (Michael Snyder, Stanford)
Project
ENCODE
Aliases
michael-snyder:pCS-573, michael-snyder:pCS-eGFP-OSR1 SK-NSH (rep3) ChIP
Date released
May 18, 2022

Isogenic replicates

Isogenic replicate
Technical replicate
Summary
Biosample
Modifications
Antibody
Library
11Homo sapiens SK-N-SH cell line genetically modified (insertion) using CRISPR targeting H. sapiens OSR1 treated with 6 μM all-trans-retinoic acid for 48 hoursENCBS678TESENCGM023VKTENCAB728YTOENCLB234RAO
21Homo sapiens SK-N-SH cell line genetically modified (insertion) using CRISPR targeting H. sapiens OSR1 treated with 6 μM all-trans-retinoic acid for 48 hoursENCBS242NBYENCGM023VKTENCAB728YTOENCLB882AJP