Experiment summary for ENCSR698RXJ

doi:10.17989/ENCSR698RXJ

Summary

Status
released
Assay
ChIP-seq (TF ChIP-seq)
Target
F55B11.4
Biosample summary
Caenorhabditis elegans strain OP385 (unc-119(tm4063) III; wgIs385) whole organism hermaphrodite young adult 65 hours post synchronization at L1 larva starved after bleaching stage genetically modified (insertion) using bombardment targeting C. elegans F55B11.4
Biosample Type
whole organisms
Replication type
isogenic
Description
ChIP-seq of transgenic worms expressing F55B11.4-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
Nucleic acid type
DNA
Fragmentation methods
sonication (generic microtip)
Size selection method
SPRI beads
Controls

Attribution

modERN project
Lab
Valerie Reinke, Yale
Award
U41HG007355 (Robert Waterston, UW)
Project
modERN
External resources
Aliases
kevin-white:F55B11.4-OP385-yAd
Date submitted
August 24, 2015
Date released
July 6, 2016
Submitter comment
ENCFF284QUR, ENCFF196HRQ were revoked because a software bug accidentally truncated the file content. The submitters will provide replacement files.

Isogenic replicates

Isogenic replicate
Technical replicate
Summary
Biosample
Modifications
Antibody
Library
11Caenorhabditis elegans strain OP385 (unc-119(tm4063) III; wgIs385) hermaphrodite young adult 65 hours post synchronization at L1 larva starved after bleaching stage whole organism genetically modified (insertion) using bombardment targeting C. elegans F55B11.4ENCBS560ZMEENCGM235LDPENCAB728YTOENCLB273JWK
21Caenorhabditis elegans strain OP385 (unc-119(tm4063) III; wgIs385) hermaphrodite young adult 65 hours post synchronization at L1 larva starved after bleaching stage whole organism genetically modified (insertion) using bombardment targeting C. elegans F55B11.4ENCBS314GUZENCGM235LDPENCAB728YTOENCLB813WMH