Experiment summary for ENCSR695BII

doi:10.17989/ENCSR695BII

Summary

Status
released
Assay
whole-genome shotgun bisulfite sequencing (WGBS)
Biosample summary
Mus musculus strain B6NCrl limb tissue embryo (15.5 days)
Biosample Type
tissue
Replication type
isogenic
Description
Whole genome bisulfite-seq on embryonic 15.5 day mouse limb
Nucleic acid type
DNA
Size range
180-500
Lysis method
QIAGEN DNeasy Blood & Tissue Kit
Fragmentation methods
shearing (Covaris S2)
Size selection method
Sera-mag SpeedBeads

Attribution

ENCODE3 project
Lab
Joe Ecker, Salk
Award
U54HG006997 (Bing Ren, UCSD)
Project
ENCODE
External resources
Aliases
joe-ecker:E15_5_LM
Date submitted
June 18, 2015
Date released
June 23, 2015
Reference Epigenome
ENCSR486MYL 
Organism Development Series
ENCSR501CNI 
Submitter comment
Fastq files ENCFF232CEU and ENCFF771QHO contain reads of mixed lengths. Read lengths followed by respective number of read: ENCFF232CEU (130, 219337173), (133, 217638766); ENCFF771QHO (130, 427846033), (133, 214336954).
Tags
Search for all Experiment with internal tag ENCYCLOPEDIAv2

Isogenic replicates

Isogenic replicate
Technical replicate
Summary
Biosample
Library
11Mus musculus strain B6NCrl mixed sex embryo (15.5 days) limb tissueENCBS735QNYENCLB862QSR
22Mus musculus strain B6NCrl mixed sex embryo (15.5 days) limb tissueENCBS696JKVENCLB693RLI
12Mus musculus strain B6NCrl mixed sex embryo (15.5 days) limb tissueENCBS735QNYENCLB878SZU
21Mus musculus strain B6NCrl mixed sex embryo (15.5 days) limb tissueENCBS696JKVENCLB430DVJ