Experiment summary for ENCSR695BII
doi:10.17989/ENCSR695BII
Summary
- Status
- released
- Assay
- whole-genome shotgun bisulfite sequencing (WGBS)
- Biosample summary
- Mus musculus strain B6NCrl limb tissue embryo (15.5 days)
- Biosample Type
- tissue
- Replication type
- isogenic
- Description
- Whole genome bisulfite-seq on embryonic 15.5 day mouse limb
- Nucleic acid type
- DNA
- Size range
- 180-500
- Lysis method
- QIAGEN DNeasy Blood & Tissue Kit
- Fragmentation methods
- shearing (Covaris S2)
- Size selection method
- Sera-mag SpeedBeads
- Platform
- Illumina HiSeq 2500
Attribution
ENCODE3 project
- Lab
- Joe Ecker, Salk
- Award
- U54HG006997 (Bing Ren, UCSD)
- Project
- ENCODE
- External resources
- Aliases
- joe-ecker:E15_5_LM
- Date submitted
- June 18, 2015
- Date released
- June 23, 2015
- Reference Epigenome
- ENCSR486MYL
- Organism Development Series
- ENCSR501CNI
- Submitter comment
- Fastq files ENCFF232CEU and ENCFF771QHO contain reads of mixed lengths. Read lengths followed by respective number of read: ENCFF232CEU (130, 219337173), (133, 217638766); ENCFF771QHO (130, 427846033), (133, 214336954).
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Library |
---|---|---|---|---|
1 | 1 | Mus musculus strain B6NCrl mixed sex embryo (15.5 days) limb tissue | ENCBS735QNY | ENCLB862QSR |
2 | 2 | Mus musculus strain B6NCrl mixed sex embryo (15.5 days) limb tissue | ENCBS696JKV | ENCLB693RLI |
1 | 2 | Mus musculus strain B6NCrl mixed sex embryo (15.5 days) limb tissue | ENCBS735QNY | ENCLB878SZU |
2 | 1 | Mus musculus strain B6NCrl mixed sex embryo (15.5 days) limb tissue | ENCBS696JKV | ENCLB430DVJ |