1. Experiments
  2. HiC
  3. Mus musculus
  4. mature B cell

Experiment summary for ENCSR690BTJ

doi:10.17989/ENCSR690BTJ

Summary

Status
released
Assay
HiC (in situ Hi-C)
Biosample summary
Mus musculus strain C57BL/6J mature B cell treated with 50 μg/mL lipopolysaccharide for 24 hours, 5 ng/mL Interleukin-4 for 24 hours, 500 ng/mL anti-CD180 for 24 hours, 401.8 ng/mL flavopiridol for 4 hours
Biosample Type
primary cell
Replication type
isogenic
Description
in situ MboI Hi-C
Treatments
50 μg/mL lipopolysaccharide (CHEBI:16412) for 24 hours, 5 ng/mL Interleukin-4 (UniProtKB:P05112) for 24 hours, 500 ng/mL anti-CD180 for 24 hours, 401.8 ng/mL flavopiridol (CHEBI:47344) for 4 hours
Nucleic acid type
DNA
Library starting quantity
5000000cells
Size range
300-500
Fragmentation methods
chemical (MboI restriction)
Size selection method
SPRI beads

Attribution

ENCODE4 project
Lab
Erez Aiden, Baylor
Award
UM1HG009375 (Erez Aiden, Baylor)
Project
ENCODE
External resources
Aliases
erez-aiden:mouse-activated-B-cells-flavo-24hours
Date submitted
November 1, 2018
Date released
January 28, 2019

Isogenic replicates

Isogenic replicate
Technical replicate
Summary
Biosample
Library
23Mus musculus strain C57BL/6J mature B primary cell treated with 50 μg/mL lipopolysaccharide for 24 hours, 5 ng/mL Interleukin-4 for 24 hours, 500 ng/mL anti-CD180 for 24 hours, 401.8 ng/mL flavopiridol for 4 hoursENCBS343GNXENCLB893TZF
33Mus musculus strain C57BL/6J mature B primary cell treated with 50 μg/mL lipopolysaccharide for 24 hours, 5 ng/mL Interleukin-4 for 24 hours, 500 ng/mL anti-CD180 for 24 hours, 401.8 ng/mL flavopiridol for 4 hoursENCBS686LQKENCLB270MIF
32Mus musculus strain C57BL/6J mature B primary cell treated with 50 μg/mL lipopolysaccharide for 24 hours, 5 ng/mL Interleukin-4 for 24 hours, 500 ng/mL anti-CD180 for 24 hours, 401.8 ng/mL flavopiridol for 4 hoursENCBS686LQKENCLB851TIG
24Mus musculus strain C57BL/6J mature B primary cell treated with 50 μg/mL lipopolysaccharide for 24 hours, 5 ng/mL Interleukin-4 for 24 hours, 500 ng/mL anti-CD180 for 24 hours, 401.8 ng/mL flavopiridol for 4 hoursENCBS343GNXENCLB580BOQ
35Mus musculus strain C57BL/6J mature B primary cell treated with 50 μg/mL lipopolysaccharide for 24 hours, 5 ng/mL Interleukin-4 for 24 hours, 500 ng/mL anti-CD180 for 24 hours, 401.8 ng/mL flavopiridol for 4 hoursENCBS686LQKENCLB007XFI
21Mus musculus strain C57BL/6J mature B primary cell treated with 50 μg/mL lipopolysaccharide for 24 hours, 5 ng/mL Interleukin-4 for 24 hours, 500 ng/mL anti-CD180 for 24 hours, 401.8 ng/mL flavopiridol for 4 hoursENCBS343GNXENCLB424EXQ
22Mus musculus strain C57BL/6J mature B primary cell treated with 50 μg/mL lipopolysaccharide for 24 hours, 5 ng/mL Interleukin-4 for 24 hours, 500 ng/mL anti-CD180 for 24 hours, 401.8 ng/mL flavopiridol for 4 hoursENCBS343GNXENCLB007EKL
11Mus musculus strain C57BL/6J mature B primary cell treated with 50 μg/mL lipopolysaccharide for 24 hours, 5 ng/mL Interleukin-4 for 24 hours, 500 ng/mL anti-CD180 for 24 hours, 401.8 ng/mL flavopiridol for 4 hoursENCBS983KRSENCLB296LCF
12Mus musculus strain C57BL/6J mature B primary cell treated with 50 μg/mL lipopolysaccharide for 24 hours, 5 ng/mL Interleukin-4 for 24 hours, 500 ng/mL anti-CD180 for 24 hours, 401.8 ng/mL flavopiridol for 4 hoursENCBS983KRSENCLB270QMD
25Mus musculus strain C57BL/6J mature B primary cell treated with 50 μg/mL lipopolysaccharide for 24 hours, 5 ng/mL Interleukin-4 for 24 hours, 500 ng/mL anti-CD180 for 24 hours, 401.8 ng/mL flavopiridol for 4 hoursENCBS343GNXENCLB908BJO
34Mus musculus strain C57BL/6J mature B primary cell treated with 50 μg/mL lipopolysaccharide for 24 hours, 5 ng/mL Interleukin-4 for 24 hours, 500 ng/mL anti-CD180 for 24 hours, 401.8 ng/mL flavopiridol for 4 hoursENCBS686LQKENCLB231MKG
14Mus musculus strain C57BL/6J mature B primary cell treated with 50 μg/mL lipopolysaccharide for 24 hours, 5 ng/mL Interleukin-4 for 24 hours, 500 ng/mL anti-CD180 for 24 hours, 401.8 ng/mL flavopiridol for 4 hoursENCBS983KRSENCLB245AIR
26Mus musculus strain C57BL/6J mature B primary cell treated with 50 μg/mL lipopolysaccharide for 24 hours, 5 ng/mL Interleukin-4 for 24 hours, 500 ng/mL anti-CD180 for 24 hours, 401.8 ng/mL flavopiridol for 4 hoursENCBS343GNXENCLB013FWM
31Mus musculus strain C57BL/6J mature B primary cell treated with 50 μg/mL lipopolysaccharide for 24 hours, 5 ng/mL Interleukin-4 for 24 hours, 500 ng/mL anti-CD180 for 24 hours, 401.8 ng/mL flavopiridol for 4 hoursENCBS686LQKENCLB441PMD
13Mus musculus strain C57BL/6J mature B primary cell treated with 50 μg/mL lipopolysaccharide for 24 hours, 5 ng/mL Interleukin-4 for 24 hours, 500 ng/mL anti-CD180 for 24 hours, 401.8 ng/mL flavopiridol for 4 hoursENCBS983KRSENCLB641BFQ

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