Experiment summary for ENCSR677MJF
doi:10.17989/ENCSR677MJF
Summary
- Status
- released
- Assay
- ATAC-seq
- Biosample summary
- Homo sapiens foreskin keratinocyte male newborn (2-4 days) treated with 1.2 mM calcium
- Biosample Type
- primary cell
- Replication type
- anisogenic
- Description
- ATAC-seq on primary keratinocytes in day 0.5 of differentiation
- Treatments
- 1.2 mM calcium (CHEBI:86158)
- Nucleic acid type
- DNA
- RNA integrity number
- 9.2 [1-1]7.1 [2-1]7.1 [2-3]7.1 [2-4]7.1 [2-2]9.2 [1-2]9.2 [1-3]7.1 [2-5]
- Platform
- Illumina HiSeq 4000
Attribution
Genomics of Gene Regulation Project
- Lab
- Will Greenleaf, Stanford
- Award
- U01HG007919 (Michael Snyder, Stanford)
- Project
- GGR
- External resources
- Aliases
- michael-snyder:ggr-skin-atacseq-day05
- Date submitted
- January 27, 2017
- Date released
- October 10, 2017
- Treatment Time Series
- ENCSR968JDE
- Annotation (gkmsvm-model)
Anisogenic replicates
Anisogenic replicate | Technical replicate | Summary | Biosample | Library |
|---|---|---|---|---|
| 1 | 1 | Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium | ENCBS927PYN | ENCLB684RWM |
| 2 | 1 | Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium | ENCBS978XWC | ENCLB153AQG |
| 2 | 3 | Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium | ENCBS978XWC | ENCLB524BPZ |
| 2 | 4 | Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium | ENCBS978XWC | ENCLB895OCD |
| 2 | 2 | Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium | ENCBS978XWC | ENCLB971GPW |
| 1 | 2 | Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium | ENCBS927PYN | ENCLB452CAH |
| 1 | 3 | Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium | ENCBS927PYN | ENCLB631VIN |
| 2 | 5 | Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium | ENCBS978XWC | ENCLB129MVO |