Experiment summary for ENCSR673WZL
doi:10.17989/ENCSR673WZL
Summary
- Status
- released
- Assay
- ChIP-seq (TF ChIP-seq)
- Target
- CTCF
- Biosample summary
- Homo sapiens LNCAP treated with 10 nM 17β-hydroxy-5α-androstan-3-one for 4 hours
- Biosample Type
- cell line
- Replication type
- isogenic
- Description
- CTCF ChIP-seq on human LNCAP
- Treatments
- 10 nM 17β-hydroxy-5α-androstan-3-one (CHEBI:16330) for 4 hours
- Nucleic acid type
- DNA
- Size range
- 450-650
- Platform
- Illumina HiSeq 2000
- Controls
Attribution
ENCODE3 project
- Lab
- Michael Snyder, Stanford
- Award
- U54HG006996 (Michael Snyder, Stanford)
- Project
- ENCODE
- External resources
- Aliases
- michael-snyder:ChIPss-754
- Date submitted
- July 14, 2017
- Date released
- June 29, 2017
- Annotation (BPNet-model)
- Submitter comment
- ENCFF091MJA and ENCFF279RQR were revoked because the flowcell was found to be bad. ENCFF616TAT, ENCFF425NMS, ENCFF677OAS and ENCFF717IEJ are their replacements. The original processed files were revoked and will be re-processed with the replacement data.
- Tags
- Registry of cCREs
- Factorbook
Encyclopedia Integration
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Antibody | Library |
|---|---|---|---|---|---|
| 1 | 1 | Homo sapiens LNCAP cell line treated with 10 nM 17β-hydroxy-5α-androstan-3-one for 4 hours | ENCBS260TRO | ENCAB498PCM | ENCLB039OJJ |
| 2 | 1 | Homo sapiens LNCAP cell line treated with 10 nM 17β-hydroxy-5α-androstan-3-one for 4 hours | ENCBS421PUJ | ENCAB498PCM | ENCLB380GDQ |