Experiment summary for ENCSR673PND
doi:10.17989/ENCSR673PND
Summary
- Status
- released
- Assay
- small RNA-seq
- Biosample summary
- Homo sapiens hepatocyte originated from H9
- Biosample Type
- in vitro differentiated cells
- Replication type
- isogenic
- Description
- The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a hepatocytic pathway. They are stranded SE101 length reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
- Treatments
- Tobacco Acid Pyrophosphatase for 1 hour
- Nucleic acid type
- RNA
- Depleted in
- rRNA
- Size range
- <200
- Fragmentation methods
- see document
- Strand specificity
- Strand-specific (forward)
- Platform
- Illumina HiSeq 2000
Attribution
ENCODE3 project
- Lab
- Thomas Gingeras, CSHL
- Award
- U54HG007004 (Thomas Gingeras, CSHL)
- Project
- ENCODE
- External resources
- References
- Date submitted
- December 13, 2014
- Date released
- December 17, 2014
- Reference Epigenome
- ENCSR217ARS
- Tags
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Library |
|---|---|---|---|---|
| 1 | 1 | Homo sapiens female embryo (5 days) hepatocyte in vitro differentiated cells originated from H9 | ENCBS077RUJ | ENCLB762TSE |
| 2 | 1 | Homo sapiens female embryo (5 days) hepatocyte in vitro differentiated cells originated from H9 | ENCBS520VFV | ENCLB884TCK |