Experiment summary for ENCSR669GJD
doi:10.17989/ENCSR669GJD
Summary
- Status
- released
- Assay
- HiC (in situ Hi-C)
- Biosample summary
- Homo sapiens THP-1 treated with 35.8 ng/mL phorbol 13-acetate 12-myristate for 72 hours
- Biosample Type
- cell line
- Replication type
- isogenic
- Description
- in situ MboI Hi-C
- Treatments
- 35.8 ng/mL phorbol 13-acetate 12-myristate (CHEBI:37537) for 72 hours
- Nucleic acid type
- DNA
- Library starting quantity
- 6000000cells
- Size range
- 300-500
- Fragmentation methods
- chemical (MboI restriction)
- Size selection method
- SPRI beads
- Platform
- Illumina HiSeq 2000, Illumina HiSeq 4000
Attribution
ENCODE3 project
- Lab
- Michael Snyder, Stanford
- Award
- U54HG006996 (Michael Snyder, Stanford)
- Project
- ENCODE
- External resources
- Aliases
- michael-snyder:THP-1_cells_pma-treated
- Date submitted
- October 4, 2017
- Date released
- October 25, 2018
- Tags
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Library |
|---|---|---|---|---|
| 1 | 1 | Homo sapiens THP-1 cell line treated with 35.8 ng/mL phorbol 13-acetate 12-myristate for 72 hours | ENCBS443IYN | ENCLB135NTF |
| 1 | 2 | Homo sapiens THP-1 cell line treated with 35.8 ng/mL phorbol 13-acetate 12-myristate for 72 hours | ENCBS443IYN | ENCLB272QBD |
| 2 | 3 | Homo sapiens THP-1 cell line treated with 35.8 ng/mL phorbol 13-acetate 12-myristate for 72 hours | ENCBS248PAQ | ENCLB412KQW |
| 1 | 3 | Homo sapiens THP-1 cell line treated with 35.8 ng/mL phorbol 13-acetate 12-myristate for 72 hours | ENCBS443IYN | ENCLB648VTO |
| 2 | 1 | Homo sapiens THP-1 cell line treated with 35.8 ng/mL phorbol 13-acetate 12-myristate for 72 hours | ENCBS248PAQ | ENCLB402DRA |
| 2 | 2 | Homo sapiens THP-1 cell line treated with 35.8 ng/mL phorbol 13-acetate 12-myristate for 72 hours | ENCBS248PAQ | ENCLB053TJC |