Experiment summary for ENCSR668OMI

Summary

Status
released
Assay
ChIP-seq (TF ChIP-seq)
Target
rpc-1
Biosample summary
Caenorhabditis elegans strain YL517 whole organism hermaphrodite young adult genetically modified using bombardment
Biosample Type
whole organisms
Replication type
isogenic
Description
ChIP-seq of transgenic worms expressing RPC-1-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
Nucleic acid type
DNA
Fragmentation methods
sonication (generic microtip)
Size selection method
E-Gel
Strand specificity
Non-strand-specific
Controls

Attribution

modERN project
Lab
Valerie Reinke, Yale
Award
U41HG007355 (Robert Waterston, UW)
Project
modERN
Aliases
kevin-white:RPC-1-YL517-yAd
Date submitted
July 30, 2015
Date released
March 9, 2018
Submitter comment
ENCFF798XQR, ENCFF006YJJ were revoked because a software bug accidentally truncated the file content. The submitters will provide replacement files. This experiment was completed during modENCODE and has lower read depth than the current modERN standard.

Isogenic replicates

Isogenic replicate
Technical replicate
Summary
Biosample
Modifications
Antibody
Library
21strain YL517 hermaphrodite young adult whole organism genetically modified (insertion) using bombardment targeting rpc-1ENCBS091WKRENCGM534DFOENCAB435FBQENCLB424SUJ
11strain YL517 hermaphrodite young adult whole organism genetically modified (insertion) using bombardment targeting rpc-1ENCBS968XEYENCGM534DFOENCAB435FBQENCLB133MWE
31strain YL517 hermaphrodite young adult whole organism genetically modified (insertion) using bombardment targeting rpc-1ENCBS663UXSENCGM534DFOENCAB435FBQENCLB370HFI