Experiment summary for ENCSR662QKG

doi:10.17989/ENCSR662QKG

Summary

Status
released
Assay
HiC (in situ Hi-C)
Biosample summary
Homo sapiens A549
Biosample Type
cell line
Replication type
isogenic
Description
Hi-C on A549 cell line treated with 100 nM dexamethasone for 0 hours.
Nucleic acid type
DNA
Size range
>200
Fragmentation methods
chemical (MboI restriction)
Size selection method
SPRI beads

Attribution

Genomics of Gene Regulation Project
Lab
Tim Reddy, Duke
Award
U01HG007900 (Tim Reddy, Duke)
Project
GGR
External resources
Aliases
tim-reddy:hic_dex.t0
Date submitted
November 21, 2016
Date released
November 23, 2016
Treatment Time Series
ENCSR842RTB 
, ENCSR435JUA 
Submitter comment
This dataset cannot be processed with version 1.15.1 of the Hi-C pipeline due to a convergence issue during hic creation.

Isogenic replicates

Isogenic replicate
Technical replicate
Summary
Biosample
Library
11Homo sapiens A549 cell lineENCBS631PPTENCLB904YTU
12Homo sapiens A549 cell lineENCBS631PPTENCLB571GEP
31Homo sapiens A549 cell lineENCBS989MQHENCLB153XCQ
21Homo sapiens A549 cell lineENCBS876WBKENCLB004YSZ
22Homo sapiens A549 cell lineENCBS876WBKENCLB998FJI
32Homo sapiens A549 cell lineENCBS989MQHENCLB817NEZ
41Homo sapiens A549 cell lineENCBS902DWKENCLB126ILD
42Homo sapiens A549 cell lineENCBS902DWKENCLB050EON