Experiment summary for ENCSR660CKG
doi:10.17989/ENCSR660CKG
Summary
- Status
- released
- Assay
- whole-genome shotgun bisulfite sequencing (WGBS)
- Biosample summary
- Mus musculus strain B6NCrl liver tissue embryo (13.5 days)
- Biosample Type
- tissue
- Replication type
- isogenic
- Description
- Whole genome bisulfite-seq on embryonic 13.5 day mouse liver
- Nucleic acid type
- DNA
- Size range
- 180-500
- Lysis method
- QIAGEN DNeasy Blood & Tissue Kit
- Fragmentation methods
- shearing (Covaris S2)
- Size selection method
- Sera-mag SpeedBeads
- Platform
- Illumina HiSeq 2500
Attribution
ENCODE3 project
- Lab
- Joe Ecker, Salk
- Award
- U54HG006997 (Bing Ren, UCSD)
- Project
- ENCODE
- External resources
- Aliases
- joe-ecker:E13_5_LV
- Date submitted
- August 14, 2015
- Date released
- August 18, 2015
- Organism Development Series
- ENCSR369AYR
- Reference Epigenome
- ENCSR266TXT
- Submitter comment
- Fastq files ENCFF319AQD, ENCFF509SUA, ENCFF304NBZ, and ENCFF771MQI contain reads of mixed lengths. Read lengths followed by respective number of reads: ENCFF319AQD (113, 209660934), (130, 396385354); ENCFF509SUA (113, 211026243), (130, 402834046); ENCFF304NBZ (113, 214501789), (130, 217157195); and ENCFF771MQI (113, 216129806), (130, 216470184).
- Tags
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Library |
|---|---|---|---|---|
| 1 | 1 | Mus musculus strain B6NCrl mixed sex embryo (13.5 days) liver tissue | ENCBS146FGW | ENCLB596SGY |
| 2 | 2 | Mus musculus strain B6NCrl mixed sex embryo (13.5 days) liver tissue | ENCBS373XWZ | ENCLB064DXB |
| 1 | 2 | Mus musculus strain B6NCrl mixed sex embryo (13.5 days) liver tissue | ENCBS146FGW | ENCLB096FSO |
| 2 | 1 | Mus musculus strain B6NCrl mixed sex embryo (13.5 days) liver tissue | ENCBS373XWZ | ENCLB402OVM |