Experiment summary for ENCSR651PAZ

doi:10.17989/ENCSR651PAZ

Summary

Status
released
Assay
whole-genome shotgun bisulfite sequencing (WGBS)
Biosample summary
Mus musculus strain B6NCrl neural tube tissue embryo (13.5 days)
Biosample Type
tissue
Replication type
isogenic
Description
Whole genome bisulfite-seq on embryonic 13.5 day mouse neural tube
Nucleic acid type
DNA
Size range
180-500
Lysis method
QIAGEN DNeasy Blood & Tissue Kit
Fragmentation methods
shearing (Covaris S2)
Size selection method
Sera-mag SpeedBeads

Attribution

ENCODE3 project
Lab
Joe Ecker, Salk
Award
U54HG006997 (Bing Ren, UCSD)
Project
ENCODE
External resources
Aliases
joe-ecker:E13_5_NT
Date submitted
August 14, 2015
Date released
August 18, 2015
Reference Epigenome
ENCSR832HYG 
Organism Development Series
ENCSR225OBZ 
Submitter comment
Fastq files ENCFF123EEE, ENCFF697GRA, ENCFF098OFT, and ENCFF766YTP contain reads of mixed lengths. Read lengths followed by respective number of reads: ENCFF123EEE (130, 200226094), (136, 418937124); ENCFF697GRA (130, 204529174), (136, 429439582); ENCFF098OFT (130, 204845320), (136, 213561768); ENCFF766YTP (130, 206988372), (136, 227227205)
Tags
Search for all Experiment with internal tag ENCYCLOPEDIAv2

Isogenic replicates

Isogenic replicate
Technical replicate
Summary
Biosample
Library
21Mus musculus strain B6NCrl mixed sex embryo (13.5 days) neural tube tissueENCBS549OYRENCLB551IIN
11Mus musculus strain B6NCrl mixed sex embryo (13.5 days) neural tube tissueENCBS956BQYENCLB805UZJ
22Mus musculus strain B6NCrl mixed sex embryo (13.5 days) neural tube tissueENCBS549OYRENCLB428LJN
12Mus musculus strain B6NCrl mixed sex embryo (13.5 days) neural tube tissueENCBS956BQYENCLB157NPV