Experiment summary for ENCSR649RCV
doi:10.17989/ENCSR649RCV
Summary
- Status
- released
- Assay
- ATAC-seq
- Biosample summary
- Homo sapiens foreskin keratinocyte male newborn (2-4 days) treated with 1.2 mM calcium for 5 days
- Biosample Type
- primary cell
- Replication type
- anisogenic
- Description
- ATAC-seq on primary keratinocytes in day 5.5 of differentiation
- Treatments
- 1.2 mM calcium (CHEBI:86158) for 5 days
- Nucleic acid type
- DNA
- RNA integrity number
- 8.2 [2-4]8.8 [1-5]8.8 [1-4]8.8 [1-6]8.2 [2-2]8.8 [1-1]8.8 [1-2]8.8 [1-3]8.2 [2-1]8.2 [2-3]
- Platform
- Illumina HiSeq 4000
Attribution
Genomics of Gene Regulation Project
- Lab
- Will Greenleaf, Stanford
- Award
- U01HG007919 (Michael Snyder, Stanford)
- Project
- GGR
- External resources
- Aliases
- michael-snyder:ggr-skin-atacseq-day55
- Date submitted
- January 27, 2017
- Date released
- October 10, 2017
- Treatment Time Series
- ENCSR968JDE
- Annotation (gkmsvm-model)
Anisogenic replicates
Anisogenic replicate | Technical replicate | Summary | Biosample | Library |
|---|---|---|---|---|
| 2 | 4 | Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 5 days | ENCBS194HUS | ENCLB417OAH |
| 1 | 5 | Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 5 days | ENCBS797AGG | ENCLB131WIP |
| 1 | 4 | Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 5 days | ENCBS797AGG | ENCLB627NLP |
| 1 | 6 | Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 5 days | ENCBS797AGG | ENCLB472LYY |
| 2 | 2 | Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 5 days | ENCBS194HUS | ENCLB561JGB |
| 1 | 1 | Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 5 days | ENCBS797AGG | ENCLB435ETQ |
| 1 | 2 | Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 5 days | ENCBS797AGG | ENCLB707DOJ |
| 1 | 3 | Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 5 days | ENCBS797AGG | ENCLB228YJR |
| 2 | 1 | Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 5 days | ENCBS194HUS | ENCLB597PAR |
| 2 | 3 | Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 5 days | ENCBS194HUS | ENCLB126RNA |