Experiment summary for ENCSR641VZA

doi:10.17989/ENCSR641VZA

Summary

Status
released
Assay
ChIP-seq (TF ChIP-seq)
Target
sem-2
Biosample summary
Caenorhabditis elegans strain OP701 (unc-119(tm4063); wgIs701 [sem-2::TY1::EGFP::3xFLAG + unc-119(+)]) whole organism mixed stage (embryo) (1 hour) using egg bleaching genetically modified (insertion) using bombardment targeting C. elegans sem-2
Biosample Type
whole organisms
Replication type
isogenic
Description
ChIP-seq on transgenic worms expressing sem-2-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
Nucleic acid type
DNA
Size range
200-800
Fragmentation methods
sonication (Bioruptor generic)
Size selection method
SPRI beads
Controls

Attribution

modERN project
Lab
Kevin White, UChicago
Award
U41HG007355 (Robert Waterston, UW)
Project
modERN
External resources
Aliases
kevin-white:SEM-2_OP701_EE
Date submitted
February 26, 2018
Date released
March 1, 2018

Encyclopedia Integration

Isogenic replicates

Isogenic replicate
Technical replicate
Summary
Biosample
Modifications
Antibody
Library
11Caenorhabditis elegans strain OP701 (unc-119(tm4063); wgIs701 [sem-2::TY1::EGFP::3xFLAG + unc-119(+)]) mixed sex mixed stage (embryo) (1 hour) using egg bleaching whole organism genetically modified (insertion) using bombardment targeting C. elegans sem-2ENCBS582GWIENCGM880AMQENCAB728YTOENCLB910LMW
31Caenorhabditis elegans strain OP701 (unc-119(tm4063); wgIs701 [sem-2::TY1::EGFP::3xFLAG + unc-119(+)]) mixed sex mixed stage (embryo) (1 hour) using egg bleaching whole organism genetically modified (insertion) using bombardment targeting C. elegans sem-2ENCBS036EXPENCGM880AMQENCAB728YTOENCLB719WZU