Experiment summary for ENCSR623VEQ
doi:10.17989/ENCSR623VEQ
Summary
- Status
- released
- Assay
- eCLIP
- Target
- TIA1
- Biosample summary
- Homo sapiens HepG2
- Biosample Type
- cell line
- Replication type
- isogenic
- Description
- eCLIP experiment on HepG2 against TIA1
- Nucleic acid type
- RNA
- Size range
- 175-300
- Fragmentation methods
- see document
- Size selection method
- agarose gel extraction
- Strand specificity
- Strand-specific
- Platform
- Illumina HiSeq 2000
- Controls
Attribution
ENCODE3 project
- Lab
- Gene Yeo, UCSD
- Award
- U54HG007005 (Brenton Graveley, UConn)
- Project
- ENCODE
- External resources
- References
- Aliases
- gene-yeo:215
- Date submitted
- March 21, 2016
- Date released
- July 15, 2015
- Submitter comment
- Fastq files ENCFF482SRR, ENCFF181GFC, ENCFF506BUC, and ENCFF643ZXH contain reads of mixed lengths. Read length followed by number of reads: ENCFF482SRR(28, 268220), (29, 279311), (30, 293439), (31, 310203), (32, 314395), (33, 312251), (34, 309447), (35, 307902), (36, 303097), (37, 293088), (38, 285007), (39, 280474), (40, 283195), (41, 334693), (42, 499876), (43, 1032373), (44, 2588546); ENCFF181GFC (28, 295048), (29, 311433), (30, 327609), (31, 339607), (32, 350172), (33, 362499), (34, 368155), (35, 364821), (36, 361578), (37, 356686), (38, 351377), (39, 345139), (40, 349810), (41, 420435), (42, 620693), (43, 1353149), (44, 3060349); ENCFF506BUC (30, 416809), (31, 293881), (32, 307341), (33, 324963), (34, 329065), (35, 325701), (36, 322887), (37, 320034), (38, 314396), (39, 303754), (40, 294438), (41, 288296), (42, 291403), (43, 317090), (44, 526997), (45, 981052), (46, 2337410); and ENCFF643ZXH (30, 425695), (31, 321500), (32, 339307), (33, 351838), (34, 363035), (35, 376281), (36, 381863), (37, 377015), (38, 373234), (39, 367523), (40, 361470), (41, 351690), (42, 351589), (43, 389018), (44, 618376), (45, 1403856), (46, 2785270).
- Tags
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Antibody | Library |
|---|---|---|---|---|---|
| 1 | 1 | Homo sapiens HepG2 cell line | ENCBS547JWV | ENCAB000BGC | ENCLB309QWE |
| 2 | 1 | Homo sapiens HepG2 cell line | ENCBS537ADD | ENCAB000BGC | ENCLB374RYB |