Experiment summary for ENCSR623VEQ

Summary

Status
released
Assay
eCLIP
Target
TIA1
Biosample summary
Homo sapiens HepG2
Biosample Type
cell line
Replication type
isogenic
Description
eCLIP experiment on HepG2 against TIA1
Nucleic acid type
RNA
Size range
175-300
Lysis method
see document
Extraction method
see document
Fragmentation methods
see document
Size selection method
agarose gel extraction
Strand specificity
Strand-specific
Controls

Attribution

ENCODE3 project
Lab
Gene Yeo, UCSD
Award
U54HG007005 (Brenton Graveley, UConn)
Project
ENCODE
External resources
Aliases
gene-yeo:215
Date submitted
March 21, 2016
Date released
July 15, 2015
Submitter comment
Fastq files ENCFF482SRR, ENCFF181GFC, ENCFF506BUC, and ENCFF643ZXH contain reads of mixed lengths. Read length followed by number of reads: ENCFF482SRR(28, 268220), (29, 279311), (30, 293439), (31, 310203), (32, 314395), (33, 312251), (34, 309447), (35, 307902), (36, 303097), (37, 293088), (38, 285007), (39, 280474), (40, 283195), (41, 334693), (42, 499876), (43, 1032373), (44, 2588546); ENCFF181GFC (28, 295048), (29, 311433), (30, 327609), (31, 339607), (32, 350172), (33, 362499), (34, 368155), (35, 364821), (36, 361578), (37, 356686), (38, 351377), (39, 345139), (40, 349810), (41, 420435), (42, 620693), (43, 1353149), (44, 3060349); ENCFF506BUC (30, 416809), (31, 293881), (32, 307341), (33, 324963), (34, 329065), (35, 325701), (36, 322887), (37, 320034), (38, 314396), (39, 303754), (40, 294438), (41, 288296), (42, 291403), (43, 317090), (44, 526997), (45, 981052), (46, 2337410); and ENCFF643ZXH (30, 425695), (31, 321500), (32, 339307), (33, 351838), (34, 363035), (35, 376281), (36, 381863), (37, 377015), (38, 373234), (39, 367523), (40, 361470), (41, 351690), (42, 351589), (43, 389018), (44, 618376), (45, 1403856), (46, 2785270).
Tags
Search for all Experiment with internal tag ENCYCLOPEDIAv5Search for all Experiment with internal tag ENCORE

Isogenic replicates

Isogenic replicateTechnical replicateSummaryBiosampleAntibodyLibrary
11HepG2 cell lineENCBS547JWVENCAB000BGCENCLB309QWE
21HepG2 cell lineENCBS537ADDENCAB000BGCENCLB374RYB